View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19430_high_15 (Length: 266)
Name: NF19430_high_15
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 257
Target Start/End: Complemental strand, 8173341 - 8173086
Alignment:
| Q |
5 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctataaa-taatcactttaaatacatatatgatgccacatatcacttagatgagaaa |
103 |
Q |
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| T |
8173341 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctaaaaaataacccctttaaatacatatatgatgccacatatcacttagatgagaaa |
8173242 |
T |
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| Q |
104 |
tcaaaatattgtcgctcattgttcaaatattttttctcaatctattctcacacttctatttg-----tttgttatggcatcatgagcctcaaatatctct |
198 |
Q |
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| T |
8173241 |
tcaaaatattatcgctcatcgttcaaatattttttctcaatctattctcacacttctatttgtttaatttgttatggcatcatgagcctca---atctct |
8173145 |
T |
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| Q |
199 |
gatccgttcttcaatctacagcaatggtgtgtaatcaaccataactggtgcatattctt |
257 |
Q |
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| T |
8173144 |
gatccgttcttcaatctacaacaatggtgtgtaatcaaccataactggtgcatattctt |
8173086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 48775276 - 48775334
Alignment:
| Q |
5 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctataaataatcactt |
63 |
Q |
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| T |
48775276 |
ttaatggtcaacttctcgtttgtgttgttcgaataagctgaatctaaaaataatcactt |
48775334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 30534543 - 30534595
Alignment:
| Q |
12 |
tcaacttctcatgtgcgttgttcaaataagcataatctataaataatcacttt |
64 |
Q |
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| T |
30534543 |
tcaacttctcatttgcgttattcaaataagcataatctaaaaataatcacttt |
30534595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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