View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19430_high_18 (Length: 231)
Name: NF19430_high_18
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_high_18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 30411131 - 30411345
Alignment:
| Q |
17 |
taaccaacatatacaatttcaatgacgaaaattatgattaattcactagtctaatgttgaaaaaatgaaaatgagatgtgtgatcatagttatacctgag |
116 |
Q |
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| T |
30411131 |
taaccaacatatacaatttcaatgacgaaaattatgattaattcactagtctaatgttgaaaatatgaaaatgagatttgtgatcatagtgatacctgag |
30411230 |
T |
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| Q |
117 |
aattgggaagcatgatgggggattcaagcaatgcggtgggactaattccaggtggtattgtgagacatggtgatggagttgcaggagaaaccaaaggggt |
216 |
Q |
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| T |
30411231 |
aattaggaagcatgatgggggattcaagcaatgcggtgggactaatcccaggtggtattgtgagacatggtgatcgagttgcaggagaaaccaaaggggt |
30411330 |
T |
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| Q |
217 |
tgttgcaccgaaact |
231 |
Q |
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| T |
30411331 |
tgttgcaccgaaact |
30411345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 30398822 - 30399024
Alignment:
| Q |
28 |
tacaatttcaatgacgaaaattatgattaattcactagtctaatgttgaaaaaatgaaaatgagatgtgtgatcatagttatacctgagaattgggaagc |
127 |
Q |
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||||||||||||||| ||||| | ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||| |||||||||||||| ||||| |
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| T |
30398822 |
tacaatttcaatgacaaaaatgacgattaattcactagtctaaaattgaataaatcaaaattacatgtgtgatcatagctatacctgagaattaagaagc |
30398921 |
T |
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| Q |
128 |
atgatgggggattcaagcaatgcggtgggactaattccaggtggtattgtgagacatggtgatggagttgcaggagaaaccaaaggggttgttgcaccga |
227 |
Q |
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| T |
30398922 |
atgacaggggattcaagcaatgcagtgggactaatcccaggtggtattgtgagccatggtgatcgagttgctggagaaaccaaagacgttgctgcaccaa |
30399021 |
T |
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| Q |
228 |
aac |
230 |
Q |
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||| |
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| T |
30399022 |
aac |
30399024 |
T |
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