View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19430_high_2 (Length: 612)

Name: NF19430_high_2
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19430_high_2
NF19430_high_2
[»] chr8 (9 HSPs)
chr8 (21-598)||(40512583-40513169)
chr8 (332-423)||(40526871-40526966)
chr8 (81-128)||(574376-574423)
chr8 (81-128)||(6038297-6038344)
chr8 (86-121)||(39201447-39201482)
chr8 (81-114)||(3757979-3758012)
chr8 (81-122)||(24195247-24195288)
chr8 (81-109)||(18422475-18422503)
chr8 (80-120)||(33445570-33445610)
[»] chr4 (10 HSPs)
chr4 (81-122)||(27655729-27655770)
chr4 (80-120)||(41346756-41346796)
chr4 (81-115)||(20403190-20403224)
chr4 (81-122)||(7282555-7282596)
chr4 (81-122)||(27871400-27871441)
chr4 (81-122)||(52936639-52936680)
chr4 (80-120)||(14136091-14136131)
chr4 (80-120)||(25999397-25999437)
chr4 (80-120)||(35151457-35151497)
chr4 (81-121)||(42756128-42756168)
[»] chr7 (8 HSPs)
chr7 (81-127)||(43539126-43539172)
chr7 (81-127)||(8318834-8318880)
chr7 (80-129)||(964762-964811)
chr7 (81-114)||(29734812-29734845)
chr7 (81-114)||(37307896-37307929)
chr7 (79-120)||(45914401-45914442)
chr7 (80-120)||(2391007-2391047)
chr7 (81-117)||(27908742-27908778)
[»] chr1 (9 HSPs)
chr1 (81-126)||(13401591-13401636)
chr1 (80-128)||(50372382-50372430)
chr1 (81-119)||(13779579-13779617)
chr1 (81-114)||(3528491-3528524)
chr1 (81-122)||(12213991-12214032)
chr1 (79-115)||(14392-14428)
chr1 (84-120)||(6818943-6818979)
chr1 (80-120)||(32030926-32030966)
chr1 (81-117)||(50533074-50533110)
[»] chr2 (9 HSPs)
chr2 (80-120)||(30243250-30243290)
chr2 (81-120)||(22571887-22571926)
chr2 (81-126)||(23782861-23782906)
chr2 (80-120)||(9459078-9459118)
chr2 (81-109)||(29896316-29896344)
chr2 (80-120)||(30089049-30089089)
chr2 (80-120)||(30125653-30125693)
chr2 (81-121)||(30799110-30799150)
chr2 (81-117)||(37984358-37984394)
[»] scaffold0350 (1 HSPs)
scaffold0350 (81-128)||(1240-1287)
[»] chr3 (6 HSPs)
chr3 (81-120)||(33223868-33223907)
chr3 (81-127)||(25441522-25441568)
chr3 (80-121)||(1501449-1501490)
chr3 (80-133)||(12131694-12131747)
chr3 (81-122)||(25289335-25289376)
chr3 (81-126)||(31214628-31214673)
[»] chr6 (2 HSPs)
chr6 (82-120)||(19277574-19277612)
chr6 (81-121)||(14945535-14945575)
[»] chr5 (3 HSPs)
chr5 (81-115)||(29962363-29962397)
chr5 (81-115)||(30012401-30012435)
chr5 (80-117)||(3416582-3416619)


Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 21 - 598
Target Start/End: Original strand, 40512583 - 40513169
Alignment:
Q  21 cataagtgaaggatgatagatttaaacaccaacaggttgtatattttttatggtggtct---------tatatattatgcattgtttctatcaactgagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| ||||| |||| ||||||||     
T  40512583 cataagtgaaggatgatagatttaaacaccaacaggttgtatattttttatggtggtctcataccttgtatatattatgtattgtctctaccaactgagt 40512682  T
Q  112 taagttcacaaagacattaacaacagtttacatatgaaattaaatcaagataccacgacacaagagtaattttgtcttattattctgtcttaaacgcttg 211  Q
    |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  40512683 taagctcacaaagacactaacaacagtttacatatgaaattaaattaagataccacgacacgagagtaattttgtcttattattctgtcttaagcgcttg 40512782  T
Q  212 gttattcttagacatacgaagatcgctgttcttacaagaaggcttttgccaaaggccaaagatgtgtcgttctgcccagtccactaactcaggaaaaagc 311  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512783 gttattcttagacatacgaagatcgccgttcttacaggaaggcttttgccaaaggccaaagatgtgtcgttctgcccagtccactaactcaggaaaaagc 40512882  T
Q  312 accttagaaggaaacaccgctttgagccatgaagggtttgtcacatacatatctcccctgcacgcactttttactatgtctttggcacattcatttgctg 411  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512883 agcttagaaggaaacaccgctttgagccatgaagggtttgtcacatacatatctcccctgcacgcactttttactatgtctttggcacattcatttgctg 40512982  T
Q  412 atcccaatggaatccattgcagactagcctacaatagttagttaatgttgtgaataaatgaattagaataagaacagacacagtagtgtaaactgcattg 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40512983 atcccaatggaatccattgcagactagcctacaatagttagttaatgttgtgaataaatgaattagaataagaacacacacagtagtgtaaactgcattg 40513082  T
Q  512 gttgaagtttaaattaaaggaggtgtaatattatgcatggaaccaattgaccaacctcttcttcatatgccttcaatgccatatttg 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40513083 gttgaagtttaaattaaaggaggtgtaatattatgcatggaaccaattgaccaacctcttcttcatatgccttcaatgccatatttg 40513169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 40526871 - 40526966
Alignment:
Q  332 tttgagccatgaagggtt----tgtcacatacatatctcccctgcacgcactttttactatgtctttggcacattcatttgctgatcccaatggaa 423  Q
    ||||||||||||||||||    ||||||||| |||||||||||||| |||| ||| |||||||||||||||||||||  || ||| ||||||||||    
T  40526871 tttgagccatgaagggttggtttgtcacataaatatctcccctgcatgcacctttcactatgtctttggcacattcaactgatgaacccaatggaa 40526966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 574423 - 574376
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagacat 128  Q
    |||||||||||||||| | |||||||||||||||| |||||| |||||    
T  574423 atatattatgcattgtctatatcaactgagctaagctcacaaggacat 574376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 6038297 - 6038344
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagacat 128  Q
    ||||||||||||||||   ||||||||||||||||||||| |||||||    
T  6038297 atatattatgcattgtccatatcaactgagctaagttcacgaagacat 6038344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 39201482 - 39201447
Alignment:
Q  86 ttatgcattgtttctatcaactgagctaagttcaca 121  Q
    |||||||||||||||||||||||||||||| |||||    
T  39201482 ttatgcattgtttctatcaactgagctaagatcaca 39201447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 3757979 - 3758012
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaa 114  Q
    ||||||||||||||||| ||||||||||||||||    
T  3757979 atatattatgcattgttcctatcaactgagctaa 3758012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 24195288 - 24195247
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaa 122  Q
    |||||||||| ||||||  |||||||||||||||||||||||    
T  24195288 atatattatgtattgttcatatcaactgagctaagttcacaa 24195247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 18422475 - 18422503
Alignment:
Q  81 atatattatgcattgtttctatcaactga 109  Q
    |||||||||||||||||||||||||||||    
T  18422475 atatattatgcattgtttctatcaactga 18422503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 33445610 - 33445570
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  33445610 tatatattatgcattgttcctaccaactgagctaagctcac 33445570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 27655770 - 27655729
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaa 122  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27655770 atatattatgcattgtttctatcaactgaactaagttcacaa 27655729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 41346796 - 41346756
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  41346796 tatatattatgcattgtttctatcaattgagttaagttcac 41346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 20403190 - 20403224
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaag 115  Q
    ||||||||||||||||| |||||||||||||||||    
T  20403190 atatattatgcattgttcctatcaactgagctaag 20403224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 7282596 - 7282555
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaa 122  Q
    |||||||||||||||||  || ||||||||||||||||||||    
T  7282596 atatattatgcattgttcataccaactgagctaagttcacaa 7282555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 27871400 - 27871441
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaa 122  Q
    ||||||||| |||||| |||||||| ||||||||||||||||    
T  27871400 atatattatacattgtctctatcaaatgagctaagttcacaa 27871441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 52936680 - 52936639
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaa 122  Q
    ||||||||| |||||||||||||||||||| |||| ||||||    
T  52936680 atatattatacattgtttctatcaactgagttaagctcacaa 52936639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 14136131 - 14136091
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  14136131 tatatattatgcattgtctttatcaactgagctaagctcac 14136091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 25999437 - 25999397
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  25999437 tatatattatgcattgtccctaccaactgagctaagttcac 25999397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 35151497 - 35151457
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  35151497 tatattttatgcattgtttatataaactgagctaagttcac 35151457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 42756128 - 42756168
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcaca 121  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  42756128 atatattatgcattgtccttatcaactgagctaagttcaca 42756168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 43539126 - 43539172
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagaca 127  Q
    ||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  43539126 atatattatgcattgttcctatcaactgagctaagctcacaaggaca 43539172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 8318880 - 8318834
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagaca 127  Q
    |||| ||||||||||||||||||||||||| |||| ||||| |||||    
T  8318880 atatgttatgcattgtttctatcaactgagttaagctcacagagaca 8318834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 964762 - 964811
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcacaaagacatt 129  Q
    |||||||||||||||||||||||| |||||| |||| |||| | ||||||    
T  964762 tatatattatgcattgtttctatcgactgagttaagctcacgaggacatt 964811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 29734812 - 29734845
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaa 114  Q
    ||||||||||||||||||||||| ||||||||||    
T  29734812 atatattatgcattgtttctatcgactgagctaa 29734845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 37307896 - 37307929
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaa 114  Q
    ||||||||||||||||| ||||||||||||||||    
T  37307896 atatattatgcattgttcctatcaactgagctaa 37307929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 45914401 - 45914442
Alignment:
Q  79 ttatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||||| |||||||||| | ||||||||||    
T  45914401 ttatatattatgcattgtctctatcaactaaactaagttcac 45914442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 2391047 - 2391007
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  2391047 tatatattatgcattgttcttaccaactgagctaagttcac 2391007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 27908742 - 27908778
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagtt 117  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  27908742 atatattaagcattgtttctatcaactgagttaagtt 27908778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 13401636 - 13401591
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagac 126  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||    
T  13401636 atatattatgcattgtctctatcaactgaactaagctcacaaagac 13401591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 50372382 - 50372430
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcacaaagacat 128  Q
    ||||||||||||||||||| |||||||||||||||| || ||| |||||    
T  50372382 tatatattatgcattgtttatatcaactgagctaagctcgcaatgacat 50372430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 13779617 - 13779579
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttca 119  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  13779617 atatattatgcattgtctatatcaactgagctaagttca 13779579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 3528491 - 3528524
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaa 114  Q
    ||||||||| ||||||||||||||||||||||||    
T  3528491 atatattatacattgtttctatcaactgagctaa 3528524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 12214032 - 12213991
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaa 122  Q
    |||||||||| |||||| ||||||||||||||||| ||||||    
T  12214032 atatattatgtattgttcctatcaactgagctaagctcacaa 12213991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 14428 - 14392
Alignment:
Q  79 ttatatattatgcattgtttctatcaactgagctaag 115  Q
    |||||||||||||||||||| || |||||||||||||    
T  14428 ttatatattatgcattgtttataccaactgagctaag 14392  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 6818979 - 6818943
Alignment:
Q  84 tattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  6818979 tattatgcattgtttctatcaactgagcaaagctcac 6818943  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 32030926 - 32030966
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  32030926 tatatattatgcattgtccctaacaactgagctaagttcac 32030966  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 50533110 - 50533074
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagtt 117  Q
    |||||||||||| |||||||| |||||||||||||||    
T  50533110 atatattatgcaatgtttctaccaactgagctaagtt 50533074  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 30243290 - 30243250
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  30243290 tatatattatgcattgtctctaccaactgagctaagttcac 30243250  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 22571887 - 22571926
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  22571887 atatattatgcattgtctatatcaactgagctaagttcac 22571926  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 23782906 - 23782861
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagac 126  Q
    ||||||||||||||||| ||| |||| |||||||| ||||||||||    
T  23782906 atatattatgcattgttcctaccaacagagctaagatcacaaagac 23782861  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 9459078 - 9459118
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  9459078 tatatattatgcattgtctttatcaactgagctaagctcac 9459118  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 29896316 - 29896344
Alignment:
Q  81 atatattatgcattgtttctatcaactga 109  Q
    |||||||||||||||||||||||||||||    
T  29896316 atatattatgcattgtttctatcaactga 29896344  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 30089089 - 30089049
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  30089089 tatatattatgcattgtccctaccaactgagctaagttcac 30089049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 30125693 - 30125653
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  30125693 tatatattatgcattgtccctaccaactgagctaagttcac 30125653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 30799110 - 30799150
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcaca 121  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  30799110 atatattatgcattgtttctaccaactgaaataagttcaca 30799150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 37984394 - 37984358
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagtt 117  Q
    |||||||||||||||||| || |||||||||||||||    
T  37984394 atatattatgcattgtttataccaactgagctaagtt 37984358  T

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Target: scaffold0350 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 1287 - 1240
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagacat 128  Q
    ||||||||||||||||   ||||||||||||||||||||| |||||||    
T  1287 atatattatgcattgtccatatcaactgagctaagttcacgaagacat 1240  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 33223907 - 33223868
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcac 120  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  33223907 atatattatgcattgtttctaccaactgagctaagctcac 33223868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 25441522 - 25441568
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagaca 127  Q
    ||||||||||||||||   || |||||||||||||||||||||||||    
T  25441522 atatattatgcattgtccataccaactgagctaagttcacaaagaca 25441568  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 1501490 - 1501449
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcaca 121  Q
    ||||||||||||||||| | ||| ||||||||||||||||||    
T  1501490 tatatattatgcattgtctttattaactgagctaagttcaca 1501449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 12131694 - 12131747
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagttcacaaagacattaaca 133  Q
    ||||||||||||||||| | || ||| ||| ||||| |||||||||||||||||    
T  12131694 tatatattatgcattgtctataccaattgaactaagctcacaaagacattaaca 12131747  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 25289335 - 25289376
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaa 122  Q
    ||||||||| |||||||| || ||||||||||||||||||||    
T  25289335 atatattatacattgtttttaccaactgagctaagttcacaa 25289376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 31214673 - 31214628
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcacaaagac 126  Q
    |||||||||||||| |||||| ||||| | ||||||||||||||||    
T  31214673 atatattatgcattatttctaccaacttaactaagttcacaaagac 31214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 19277612 - 19277574
Alignment:
Q  82 tatattatgcattgtttctatcaactgagctaagttcac 120  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  19277612 tatattatgcattgttcctatcaactgagttaagttcac 19277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 14945535 - 14945575
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaagttcaca 121  Q
    |||||||||||| ||| |||||||||||||||||| |||||    
T  14945535 atatattatgcactgtctctatcaactgagctaagctcaca 14945575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 29962397 - 29962363
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaag 115  Q
    ||||||||| |||||||||||||||||||||||||    
T  29962397 atatattatacattgtttctatcaactgagctaag 29962363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 30012401 - 30012435
Alignment:
Q  81 atatattatgcattgtttctatcaactgagctaag 115  Q
    ||||||||| |||||||||||||||||||||||||    
T  30012401 atatattatacattgtttctatcaactgagctaag 30012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 3416582 - 3416619
Alignment:
Q  80 tatatattatgcattgtttctatcaactgagctaagtt 117  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  3416582 tatatattatacattgtttctatcaactgagttaagtt 3416619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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