View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19430_low_1 (Length: 679)
Name: NF19430_low_1
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 1732119 - 1731818
Alignment:
| Q |
8 |
acatcatcataatgaaaaacatatccaaattcattcatcaaagaaagcaagcaaccaacctgctcggaagtgaggcggcgcttcttctccggtgactgct |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1732119 |
acatcatcatagtgaaaaacatatccaaattcattcatcaaagaaagcaagcaaccaacctgctcggaagtgaggcggcgcttcttctccggtgactgct |
1732020 |
T |
|
| Q |
108 |
cctcgtagtactcctcatcatacagttcatcaggtgagctaaagaaaggtctcctctttgagccttcctccatgctcatcattgaccttcctgctttcat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1732019 |
cctcgtagtactcctcatcatacagttcatcaggtgagctaaagaaaggtctcctctttgagccttcctccatgctcatcattgaccttcctgctttcat |
1731920 |
T |
|
| Q |
208 |
tcnnnnnnnnnnnnnnnnnnnnnnncctcatcaatttacactcttttctacatcaaacacctcaaacaacatctatatcacaaatcataacacttgcaac |
307 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1731919 |
tcagaaaaattcaaaaaattaaaaacctcatcaatttacactcttttctacatcaaacacctcaaacaacatctatatcacaaatcataatacttgcaac |
1731820 |
T |
|
| Q |
308 |
ac |
309 |
Q |
| |
|
|| |
|
|
| T |
1731819 |
ac |
1731818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 355 - 492
Target Start/End: Complemental strand, 1731772 - 1731634
Alignment:
| Q |
355 |
tattctaattcattttctcacagcctaattttgtgatgcacaaccaagttgctttctttaacaaaaactcaaatcaaatcatatc-ttcnnnnnnnnngt |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
1731772 |
tattctaattcattttctcacagcctaattttgtgatgcacaaccaagttgctttctttaacaaaaactcaaatcaaatcatatctttttttttttttgt |
1731673 |
T |
|
| Q |
454 |
ttgcccaaatttgatacaaaatcaagttgcttcttttac |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1731672 |
ttgcccaaatttgatacaaaatcaagttgcttcttttac |
1731634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 562 - 663
Target Start/End: Complemental strand, 1731574 - 1731473
Alignment:
| Q |
562 |
ccatctgtccataagacgtaactcaactcataaaatcaatattgttatactaaacaccttcacttgggtccgaacctgaacttctcaattgtgtgtgagt |
661 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
1731574 |
ccatctgtccataagacctaactcaactcataaaatcaatattgttatactaaacaccttcacttgggtccaaacctgaacttctcagttgtgtgtgagt |
1731475 |
T |
|
| Q |
662 |
tt |
663 |
Q |
| |
|
|| |
|
|
| T |
1731474 |
tt |
1731473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University