View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19430_low_12 (Length: 345)
Name: NF19430_low_12
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 46643079 - 46642756
Alignment:
| Q |
18 |
attaggtaaacagcctttcattttgctgttcgtcataattatctcattgattgtatccttcatattcgctacactcgatggaatacaaccttgtatatca |
117 |
Q |
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| T |
46643079 |
attaggtaaacagcctttcattctgctgttcgtcataattatctcgttgattgtatctttcatattcgctacactcgatggaatacaaccttgtatatca |
46642980 |
T |
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| Q |
118 |
ttgttcgcgaacacaacaacagaagctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatcaagtttga |
217 |
Q |
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| T |
46642979 |
ttgttcgcgaacacaacaacagaagctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatcaagtttga |
46642880 |
T |
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| Q |
218 |
gatcaaagaggcctttaggaacatttccttgaaaattgttgtatcttatgtctaagtattttaatgaaggaatgcaaagaacaacctccggaaatgttcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46642879 |
gatcaaagaggcctttaggaacatttccttgaaaattgttgtatcttatgtccaagtattttaatgaaggaatgcaaagaacaacctccgggaatgttcc |
46642780 |
T |
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| Q |
318 |
tgagaattggttgttgatgatgtc |
341 |
Q |
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||||||||||||||| ||||||| |
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| T |
46642779 |
tgagaattggttgttactgatgtc |
46642756 |
T |
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