View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19430_low_14 (Length: 324)
Name: NF19430_low_14
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_low_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 12703562 - 12703251
Alignment:
| Q |
8 |
ggaagttggtaaagagagaagattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaccaacctgtctcttctcctcaagagcctta |
107 |
Q |
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| T |
12703562 |
ggaagttgctaatgggtgaagattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaacaacctgtctcttcacctcaagagcctta |
12703463 |
T |
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| Q |
108 |
ttcctctgacagtactcaaagcagcaagaggaagaggtgcaccttgttacctaatcaagatcatggtgggaatagatcgcttagaaacttgttaactgca |
207 |
Q |
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| T |
12703462 |
ttcctctgacagtactcaaagcagcaagagaaagaggtgcaccttgttacctaatcaagatcatggtg-----agaaagcttagaaacttgttaactgca |
12703368 |
T |
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| Q |
208 |
ttgtttattactgtgttgtttaaaccttgtttacaaaatctaatgtgtactactttgtgaaacagaagctgctattcaaactcgtcttccattgatgaaa |
307 |
Q |
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| T |
12703367 |
ttgtttattgctgtgttgtttaaaccttgtttacaaaatctaatgtgtactactttgtgaaacagaagatgctattaaaactcgtcttccattgacgaaa |
12703268 |
T |
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| Q |
308 |
catagcgaacctgagaa |
324 |
Q |
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| T |
12703267 |
catagcgaacctgagaa |
12703251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 8207427 - 8207140
Alignment:
| Q |
28 |
gattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaccaacctgtctcttctcctcaagagccttattcctctgacagtactcaaa |
127 |
Q |
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| T |
8207427 |
gattatgagaatgaacaactcgaaaggagtggtataaccgaggaacttgaacaacctgtctgttctcctcaagagccctactcttcggatagttctcaaa |
8207328 |
T |
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| Q |
128 |
gcagcaagaggaagaggtgcaccttgttacctaatcaagatcatggtgggaatagatcgcttagaaacttgttaactgcattgtttattactgtgttgtt |
227 |
Q |
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| T |
8207327 |
gcagtaagaggaaacggggcaccgagtttcctagccaagatcatggtg-----agaaagcttagaaaccagtcaattacattgttcattactgtgttgtt |
8207233 |
T |
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| Q |
228 |
taaaccttgtttacaaaatctaatgtgtactactttgtgaaacagaagctgctattcaaactcgtcttccattgatgaaacatagcgaacctgag |
322 |
Q |
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||| |||||||| || ||||||| |||| | | |||||||||| |||| |||| || ||| |||||||||| ||||||| | ||||||||| |
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| T |
8207232 |
taacccttgttt--aatatctaatatgtattcttatgtgaaacaggtcctgccattcgaattcggcttccattgaggaaacatcgtgaacctgag |
8207140 |
T |
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