View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19430_low_24 (Length: 226)

Name: NF19430_low_24
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19430_low_24
NF19430_low_24
[»] chr6 (25 HSPs)
chr6 (1-159)||(25030411-25030570)
chr6 (1-138)||(28733434-28733573)
chr6 (1-138)||(10916499-10916636)
chr6 (8-133)||(26822514-26822638)
chr6 (1-93)||(18993813-18993905)
chr6 (5-138)||(12659740-12659874)
chr6 (28-131)||(18628112-18628217)
chr6 (37-130)||(26018659-26018752)
chr6 (8-131)||(19612037-19612163)
chr6 (25-131)||(23346481-23346588)
chr6 (95-138)||(24392187-24392230)
chr6 (6-130)||(29094202-29094327)
chr6 (29-131)||(15470473-15470574)
chr6 (28-131)||(23509699-23509804)
chr6 (32-125)||(12443221-12443317)
chr6 (8-130)||(29360979-29361103)
chr6 (1-131)||(19696062-19696192)
chr6 (37-132)||(26139363-26139458)
chr6 (32-122)||(29597022-29597114)
chr6 (32-131)||(15172905-15173003)
chr6 (31-130)||(20164872-20164973)
chr6 (31-130)||(20171569-20171670)
chr6 (29-131)||(20465057-20465159)
chr6 (50-130)||(17120223-17120306)
chr6 (49-93)||(25922726-25922770)
[»] chr1 (15 HSPs)
chr1 (9-138)||(16147744-16147875)
chr1 (1-138)||(12059077-12059214)
chr1 (1-138)||(25404378-25404517)
chr1 (1-93)||(49056448-49056541)
chr1 (2-131)||(20860002-20860132)
chr1 (27-138)||(26194911-26195023)
chr1 (32-130)||(4029002-4029103)
chr1 (1-129)||(20498207-20498336)
chr1 (86-138)||(13798688-13798740)
chr1 (7-139)||(23299540-23299674)
chr1 (6-123)||(28763182-28763303)
chr1 (8-129)||(20449064-20449186)
chr1 (8-129)||(20534830-20534952)
chr1 (31-130)||(20400306-20400407)
chr1 (28-132)||(20412941-20413045)
[»] chr7 (17 HSPs)
chr7 (8-138)||(11483155-11483285)
chr7 (1-138)||(4255912-4256051)
chr7 (8-138)||(4460088-4460218)
chr7 (4-131)||(4541822-4541953)
chr7 (93-139)||(17912334-17912380)
chr7 (50-132)||(16896563-16896648)
chr7 (37-130)||(48354862-48354955)
chr7 (8-130)||(3375809-3375932)
chr7 (62-138)||(38878147-38878225)
chr7 (32-131)||(4465088-4465188)
chr7 (5-132)||(8521461-8521590)
chr7 (37-130)||(17947439-17947532)
chr7 (167-212)||(5907795-5907840)
chr7 (31-130)||(14753459-14753560)
chr7 (70-131)||(17205855-17205916)
chr7 (165-198)||(42646515-42646548)
chr7 (28-132)||(8837248-8837351)
[»] scaffold0001 (4 HSPs)
scaffold0001 (1-139)||(521403-521543)
scaffold0001 (93-139)||(33625-33671)
scaffold0001 (93-139)||(38932-38978)
scaffold0001 (1-138)||(81907-82046)
[»] chr2 (10 HSPs)
chr2 (4-139)||(24609365-24609500)
chr2 (5-138)||(19012306-19012441)
chr2 (93-139)||(19121406-19121452)
chr2 (93-139)||(20855189-20855235)
chr2 (101-138)||(24370736-24370773)
chr2 (70-130)||(15578581-15578641)
chr2 (5-93)||(27074791-27074879)
chr2 (50-97)||(23634646-23634693)
chr2 (51-130)||(24176994-24177076)
chr2 (51-93)||(20693-20735)
[»] chr8 (9 HSPs)
chr8 (4-138)||(24059620-24059756)
chr8 (1-139)||(18008757-18008895)
chr8 (1-139)||(24342535-24342676)
chr8 (1-74)||(21320077-21320150)
chr8 (86-138)||(14155981-14156033)
chr8 (32-130)||(21950817-21950916)
chr8 (28-138)||(26854755-26854867)
chr8 (32-130)||(21956619-21956718)
chr8 (67-139)||(31469017-31469088)
[»] chr5 (9 HSPs)
chr5 (8-138)||(22171451-22171585)
chr5 (1-138)||(16677731-16677871)
chr5 (36-128)||(12411215-12411308)
chr5 (28-130)||(19890423-19890526)
chr5 (51-130)||(90545-90627)
chr5 (36-124)||(23342824-23342912)
chr5 (32-130)||(23626121-23626222)
chr5 (167-207)||(2112515-2112555)
chr5 (4-131)||(31415137-31415268)
[»] scaffold0213 (1 HSPs)
scaffold0213 (1-138)||(22237-22377)
[»] chr4 (11 HSPs)
chr4 (1-138)||(11921742-11921882)
chr4 (8-138)||(8561610-8561740)
chr4 (1-130)||(33330317-33330447)
chr4 (67-138)||(13882823-13882893)
chr4 (8-138)||(11325612-11325744)
chr4 (29-138)||(25190867-25190976)
chr4 (38-130)||(21275952-21276044)
chr4 (93-139)||(5676222-5676268)
chr4 (37-130)||(12845623-12845716)
chr4 (93-138)||(23793328-23793373)
chr4 (167-204)||(24546806-24546843)
[»] scaffold0011 (1 HSPs)
scaffold0011 (28-136)||(175586-175696)
[»] chr3 (18 HSPs)
chr3 (3-131)||(8532546-8532670)
chr3 (1-132)||(20224533-20224666)
chr3 (1-131)||(17775436-17775567)
chr3 (1-131)||(19076737-19076868)
chr3 (86-138)||(42243832-42243884)
chr3 (37-130)||(47975506-47975599)
chr3 (1-132)||(13419042-13419176)
chr3 (93-131)||(11848176-11848214)
chr3 (93-138)||(8685142-8685187)
chr3 (31-130)||(10141731-10141832)
chr3 (31-130)||(10148337-10148438)
chr3 (31-130)||(10165622-10165723)
chr3 (34-130)||(10850020-10850120)
chr3 (31-130)||(13192836-13192937)
chr3 (28-132)||(40847158-40847264)
chr3 (31-125)||(10158966-10159062)
chr3 (32-130)||(13134998-13135098)
chr3 (32-122)||(37977617-37977711)
[»] scaffold0074 (2 HSPs)
scaffold0074 (1-93)||(53580-53672)
scaffold0074 (95-138)||(22032-22075)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-56)||(14734-14790)
[»] scaffold0443 (1 HSPs)
scaffold0443 (95-136)||(3795-3836)
[»] scaffold0713 (1 HSPs)
scaffold0713 (37-132)||(5998-6093)
[»] scaffold0512 (1 HSPs)
scaffold0512 (34-130)||(6437-6536)
[»] scaffold0042 (2 HSPs)
scaffold0042 (51-94)||(16759-16802)
scaffold0042 (32-130)||(55955-56056)
[»] scaffold0098 (1 HSPs)
scaffold0098 (28-139)||(3811-3924)
[»] scaffold0049 (1 HSPs)
scaffold0049 (93-131)||(31866-31904)
[»] scaffold0035 (1 HSPs)
scaffold0035 (37-130)||(49311-49404)
[»] scaffold0014 (1 HSPs)
scaffold0014 (93-131)||(168941-168979)
[»] scaffold0004 (1 HSPs)
scaffold0004 (60-130)||(250608-250681)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 25030570 - 25030411
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttatta 98  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||  |||||||||    
T  25030570 accgttaaaaatcccaacttttcaactaaactctcttataatcattcttaaaagttaactgaattaaacaactccatgttggaacgataatctcttatta 25030471  T
Q  99 atacatcgataaaccgtgcacttgcggatttactacatcatcttcatccaccaaaaggaat 159  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25030470 ata-atcgataaaccgtgcacttgcggatttactacatcatcttcatccaccaaaaggaat 25030411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28733573 - 28733434
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttatta 98  Q
    ||||||||||||||||| ||||| ||| |||| |||||||||||||| |||||||||  |||||||||||||||| ||| |||| ||||  ||||| |||    
T  28733573 accgttaaaaatcccaagttttcaactgaactttcttctaatcattcataaaagttaattgaattaaacaactccctgtcggaacgatactctcttttta 28733474  T
Q  99 atacatcgataaaccgtgcacttgcggatttactacatca 138  Q
     ||| ||| ||||||| |||||||||||||||||||||||    
T  28733473 ctacttcggtaaaccgcgcacttgcggatttactacatca 28733434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 10916499 - 10916636
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaat 100  Q
    ||||||||||||| |||||| || ||| |||||||||||||||||||| ||| ||||  |||||||||||||| | ||| |||| ||||||||| ||| |    
T  10916499 accgttaaaaatctcaacttctcaactgaactctcttctaatcattctcaaaggttaattgaattaaacaacttcctgtcggaacgatactctttttact 10916598  T
Q  101 acatcgataaaccgtgcacttgcggatttactacatca 138  Q
    || ||| ||||||||||| |||| ||||||||| ||||    
T  10916599 acttcggtaaaccgtgcatttgcagatttactatatca 10916636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 26822514 - 26822638
Alignment:
Q  8 aaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt-attaatacatcg 106  Q
    |||||||||||||||| |  ||||||| |||||||||||| || | ||||  |||||| || || ||||||| |||| ||||||||| |||| |||| ||    
T  26822514 aaaatcccaacttttcaa--aaactcttttctaatcattcatagaggttaattgaattcaaaaattccatgtcggaacgatactctttattactacaccg 26822611  T
Q  107 ataaaccgtgcacttgcggatttacta 133  Q
     ||||| ||||||||||||||||||||    
T  26822612 gtaaactgtgcacttgcggatttacta 26822638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 18993813 - 18993905
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct 93  Q
    |||||||||||||| |||||||| ||| |||| ||||||||||||   |||||||||  |||||| ||||||||| | |||||| ||||||||    
T  18993813 accgttaaaaatcctaacttttcaactgaactttcttctaatcatcaataaaagttaattgaattgaacaactccctcttggaaggatactct 18993905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 12659874 - 12659740
Alignment:
Q  5 ttaaaaatcccaacttttcgactaa-actctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt-attaatac 102  Q
    |||||||||| |||||||| | | | ||||| ||||||| ||| || |||||||  ||||| ||| ||||||||||  ||| ||||||||| |||| |||    
T  12659874 ttaaaaatccaaacttttcaattcagactcttttctaataattgttgaaagttaattgaat-aaataactccatgtcagaacgatactctttattactac 12659776  T
Q  103 atcgataaaccgtgcacttgcggatttactacatca 138  Q
    |||| || |||||||||||||||| |||||||||||    
T  12659775 atcggtagaccgtgcacttgcggacttactacatca 12659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 18628112 - 18628217
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttattaatacatcgataaaccgtgcacttgcgg 125  Q
    ||||||| | ||||||||   |||||||||  |||||||||||||||| |||||||| ||||  ||||| ||| ||| ||| ||||||||||| ||||||    
T  18628112 aaactctttcctaatcatcaataaaagttaattgaattaaacaactccctgttggaacgatactctctttttactacttcggtaaaccgtgcatttgcgg 18628211  T
Q  126 atttac 131  Q
    ||||||    
T  18628212 atttac 18628217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 26018659 - 26018752
Alignment:
Q  37 tctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgata-aaccgtgcacttgcggattta 130  Q
    |||||||||| ||||||||||  |||||| |  |||||||||| |||||||||||||| ||| ||| |||||| |||||||||||||||| ||||    
T  26018659 tctaatcattgttaaaagttaattgaattcat-aactccatgtaggaatgatactctttttattacttcgatagaaccgtgcacttgcggtttta 26018752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 19612163 - 19612037
Alignment:
Q  8 aaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct--tattaatacat 104  Q
    |||||| ||||||| | ||| ||||||| ||||||||||   |||||||||   ||||| ||||||||  |||||||| ||||||||  | ||| ||| |    
T  19612163 aaaatcacaactttgcaactgaaactcttttctaatcatcaataaaagttaatcgaattgaacaactctctgttggaacgatactctctttttactactt 19612064  T
Q  105 cgataaaccgtgcacttgcggatttac 131  Q
    || ||||||||||||||||||||||||    
T  19612063 cggtaaaccgtgcacttgcggatttac 19612037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 23346588 - 23346481
Alignment:
Q  25 actaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt-attaatacatcgataaaccgtgcacttgc 123  Q
    |||||| |||||||||||||||| ||| |||||  |||||| || || ||| | | |||| || |||||| |||| ||||||| ||||||||||||||||    
T  23346588 actaaaatctcttctaatcattcgtaatagttaattgaattcaaaaattccctatcggaacgacactctttattactacatcggtaaaccgtgcacttgc 23346489  T
Q  124 ggatttac 131  Q
    | ||||||    
T  23346488 gaatttac 23346481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 24392230 - 24392187
Alignment:
Q  95 attaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
T  24392230 attactacatcggtaaaccgtgcacttgcggatttactacatca 24392187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 29094202 - 29094327
Alignment:
Q  6 taaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt--attaataca 103  Q
    ||||||||| |||||| | || ||||||| ||||| ||||| || |||||||  |||||| |  |||||| ||| |||| |||||||||  |||| ||||    
T  29094202 taaaaatccaaactttacaacaaaactcttttctactcattgttgaaagttaattgaattcat-aactccctgtcggaacgatactcttttattactaca 29094300  T
Q  104 tcgataaaccgtgcacttgcggattta 130  Q
    ||| |||| ||||||||||||||||||    
T  29094301 tcggtaaatcgtgcacttgcggattta 29094327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 15470574 - 15470473
Alignment:
Q  29 aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataaaccgtgcacttgcggatt 128  Q
    |||||||| ||||||||| ||||||||||  |||||| |  |||||| ||| |||||||||   |||||| ||| ||| ||||| |||||||||||||||    
T  15470574 aactctctgctaatcattgttaaaagttaattgaattcat-aactccttgtcggaatgatatctttattactacttcggtaaactgtgcacttgcggatt 15470476  T
Q  129 tac 131  Q
    |||    
T  15470475 tac 15470473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 23509804 - 23509699
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct--tattaatacatcgataaaccgtgcacttgcgg 125  Q
    ||||||| ||||||||||   |||||||||    |||| |||||||||||||| ||| ||||||||  | ||| ||| ||| ||||||||||||||||||    
T  23509804 aaactcttttctaatcatcaataaaagttaatcaaattgaacaactccatgttagaacgatactctctttttactacttcggtaaaccgtgcacttgcgg 23509705  T
Q  126 atttac 131  Q
    ||||||    
T  23509704 atttac 23509699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 12443221 - 12443317
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttatt--aatacatcgataaa-ccgtgcacttgcgg 125  Q
    |||||||||||||    |||||||||  |||||||||||||||| |||||||| ||||||||||||  | ||| |||| ||| ||||||||||||||    
T  12443221 tctcttctaatcaccaataaaagttaattgaattaaacaactccttgttggaacgatactcttattttactacttcgacaaaaccgtgcacttgcgg 12443317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 29360979 - 29361103
Alignment:
Q  8 aaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct--tattaatacatc 105  Q
    |||| ||||||||| | ||| || ||||||||||||||     |||||||  | |||| ||||||||| |||||||| ||||||||  | ||| ||| ||    
T  29360979 aaaaccccaactttgcaacttaattctcttctaatcatcaactaaagttaattaaattgaacaactccctgttggaacgatactctatttttattacttc 29361078  T
Q  106 gataaaccgtgcacttgcggattta 130  Q
    |||||||||||||||||||| ||||    
T  29361079 gataaaccgtgcacttgcggtttta 29361103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 19696062 - 19696192
Alignment:
Q  1 accgttaaaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttatta 98  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||||| || | |||   | ||||  | ||||| |||| |||| ||||||| ||||||    
T  19696062 accgttaataatcccaacttttcaactgaaactctcttctaatcattcgtagaggttgattaaatt-cataactcaatgtcggaacgatactctttatta 19696160  T
Q  99 atacatcgataaaccgtgcacttgcggatttac 131  Q
     ||| ||| ||||| ||||||||||||||||||    
T  19696161 ctac-tcggtaaactgtgcacttgcggatttac 19696192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 26139363 - 26139458
Alignment:
Q  37 tctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgata-aaccgtgcacttgcggatttact 132  Q
    |||||||||| ||||||||||  |||||| |  |||||| ||| |||| ||||||||| ||| ||| |||||| |||||||||||||||| ||||||    
T  26139363 tctaatcattgttaaaagttaattgaattcat-aactccctgtcggaacgatactctttttattacttcgatagaaccgtgcacttgcggttttact 26139458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 29597022 - 29597114
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttg 122  Q
    ||||||||||||||   |||||||||  |||||||| ||||||||||| |||| ||||||| |||||| ||| ||| ||| ||||||||||||    
T  29597022 tctcttctaatcatcagtaaaagttaattgaattaaccaactccatgtcggaacgatactctttattactacttcggtaagaccgtgcacttg 29597114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 15172905 - 15173003
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataaaccgtgcacttgcggatttac 131  Q
    ||||| ||||||||| ||||||||||  |||||| |  |||||| ||| |||||||||   |||||| ||| ||| ||||| ||||||||||||||||||    
T  15172905 tctctgctaatcattgttaaaagttaattgaattcat-aactccttgtcggaatgatatctttattactacttcggtaaactgtgcacttgcggatttac 15173003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 20164872 - 20164973
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||||||||||||   |||| |||| || |||||||| ||||| ||| |||| ||||||| |||||| ||| ||| ||| ||||||||||||||| ||    
T  20164872 ctctcttctaatcatctctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcggttt 20164971  T
Q  129 ta 130  Q
    ||    
T  20164972 ta 20164973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 20171569 - 20171670
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||||||||||||   |||| |||| || |||||||| ||||| ||| |||| ||||||| |||||| ||| ||| ||| ||||||||||||||| ||    
T  20171569 ctctcttctaatcatctctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcggttt 20171668  T
Q  129 ta 130  Q
    ||    
T  20171669 ta 20171670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 20465057 - 20465159
Alignment:
Q  29 aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatac--tcttattaatacatcgataaaccgtgcacttgcgga 126  Q
    ||||||| ||||||||||||| |||||||  ||||||  | |||||||||| |||| |||||  | |||||| ||| ||| |||| ||||||||||||||    
T  20465057 aactctcatctaatcattcttgaaagttaattgaatt-cataactccatgtcggaacgatactattttattactacttcg-taaatcgtgcacttgcgga 20465154  T
Q  127 tttac 131  Q
    |||||    
T  20465155 tttac 20465159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 17120223 - 17120306
Alignment:
Q  50 aaaagttacctgaattaaacaactccatgttggaatgatactctta--ttaatacatcgat-aaaccgtgcacttgcggattta 130  Q
    ||||||||  |||||||||||||||| |||  ||| ||||||||||  ||| ||| ||||| ||||||||||||||||| ||||    
T  17120223 aaaagttaattgaattaaacaactccctgtcagaacgatactcttattttactacttcgataaaaccgtgcacttgcggtttta 17120306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 25922770 - 25922726
Alignment:
Q  49 taaaagttacctgaattaaacaactccatgttggaatgatactct 93  Q
    |||||||||  |||||| |||||||||||||||||| ||||||||    
T  25922770 taaaagttaattgaattgaacaactccatgttggaacgatactct 25922726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 16147875 - 16147744
Alignment:
Q  9 aaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttattaatacatcg 106  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  16147875 aaatcccaacttttcaactaaactctcttctaatcattcataaaagttaattgaattaaacaactccatgttggaacgatactctcttattactacatcg 16147776  T
Q  107 ataaaccgtgcacttgcggatttactacatca 138  Q
     ||||| || |||||||| |||||||||||||    
T  16147775 gtaaactgtacacttgcgaatttactacatca 16147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 12059214 - 12059077
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaat 100  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||| | |||||||||  |||||| ||||||||| ||| |||| ||||| ||||||| |    
T  12059214 accgttaaaaatctcaacttttcaactgaactttcttctaatcatccataaaagttaattgaattcaacaactccctgtcggaacgatacacttattact 12059115  T
Q  101 acatcgataaaccgtgcacttgcggatttactacatca 138  Q
    ||| || |||||||||||||||||||||||||||||||    
T  12059114 acaccggtaaaccgtgcacttgcggatttactacatca 12059077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 25404517 - 25404378
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc--ttatta 98  Q
    |||||||||||||| |||||||| ||| |||| ||||||||||||   |||||||||  |||||| ||||||||| | | |||| |||||||  ||||||    
T  25404517 accgttaaaaatccaaacttttcaactgaactttcttctaatcatcactaaaagttaattgaattcaacaactccctctcggaacgatactcttttatta 25404418  T
Q  99 atacatcgataaaccgtgcacttgcggatttactacatca 138  Q
     ||||||| |||| ||||||||| ||||||||||||||||    
T  25404417 ctacatcggtaaatcgtgcactttcggatttactacatca 25404378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 49056448 - 49056541
Alignment:
Q  1 accgttaaaaat-cccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct 93  Q
    |||||||||||| ||||||||||| |||| |||  ||||||| ||||| |||||||||  | |||||||||||||| |||||||| ||||||||    
T  49056448 accgttaaaaattcccaacttttcaactatacttccttctaaacattcgtaaaagttaattaaattaaacaactccttgttggaacgatactct 49056541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 20860132 - 20860002
Alignment:
Q  2 ccgttaaaaatcccaacttttcgac-taaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaa 99  Q
    |||||||||||||||||||||| || | |||||||||||||||||| |||||| | |  ||||||  | |||||| ||| | || |||| || ||||||     
T  20860132 ccgttaaaaatcccaacttttcaacttgaactctcttctaatcattgttaaaactcaattgaatt-cataactccctgtcgaaacgatagtctttattac 20860034  T
Q  100 tacatcgataaaccgtgcacttgcggatttac 131  Q
    ||| ||| ||||||||||||||||||||||||    
T  20860033 tacttcggtaaaccgtgcacttgcggatttac 20860002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 26194911 - 26195023
Alignment:
Q  27 taaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt--attaatacatcgataaaccgtgcacttgcg 124  Q
    |||||||||||||||||||| |||||| |||  |||| | |  |||||| |||||||| |||| ||||  |||| ||||||| ||||||||||||||||     
T  26194911 taaactctcttctaatcattgttaaaatttaattgaactcat-aactccctgttggaacgataatcttttattactacatcggtaaaccgtgcacttgca 26195009  T
Q  125 gatttactacatca 138  Q
    |||||||| |||||    
T  26195010 gatttactccatca 26195023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 4029002 - 4029103
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctta--ttaatacatcgata-aaccgtgcacttgcggatt 128  Q
    ||||||||||||||    ||||||||  |||||| ||||||||||||| |||| ||||||||||  ||||||| |||||| |||||| ||||||||| ||    
T  4029002 tctcttctaatcatcaacaaaagttaattgaatttaacaactccatgtcggaacgatactcttattttaatacttcgatagaaccgtacacttgcggttt 4029101  T
Q  129 ta 130  Q
    ||    
T  4029102 ta 4029103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 20498207 - 20498336
Alignment:
Q  1 accgttaaaaatcccaacttttcgacta-aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt-atta 98  Q
    |||| ||||||||| |||||||| |||  |||||||||||||||||| |||||||| |  | |||| |  || ||  |||||||| ||||||||| ||||    
T  20498207 accgctaaaaatcctaacttttcaacttgaactctcttctaatcattgttaaaagtcaattaaattcat-aagtcactgttggaacgatactctttatta 20498305  T
Q  99 atacatcgataaaccgtgcacttgcggattt 129  Q
     ||| ||| ||||||||||||||||||||||    
T  20498306 ctacttcggtaaaccgtgcacttgcggattt 20498336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 13798740 - 13798688
Alignment:
Q  86 gatactcttattaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    ||||||||| ||| ||  ||| |||||||||||||||||||||||||||||||    
T  13798740 gatactctttttactatttcggtaaaccgtgcacttgcggatttactacatca 13798688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 23299540 - 23299674
Alignment:
Q  7 aaaaatcccaacttttcgacta-aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc--ttattaataca 103  Q
    |||||||| |||||||| |||  |||||||||||||||||| ||||| ||||  | |||| |  | |||  ||| |||| |||||||  |||||| |||     
T  23299540 aaaaatccaaacttttcaacttgaactctcttctaatcattgttaaaggttaattaaattcat-agctctctgtcggaacgatactcatttattactact 23299638  T
Q  104 tcgataaaccgtgcacttgcggatttactacatcat 139  Q
    ||| |||||||||||||||||||||||||| |||||    
T  23299639 tcggtaaaccgtgcacttgcggatttactatatcat 23299674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 28763303 - 28763182
Alignment:
Q  6 taaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc----ttattaata 101  Q
    ||||||||| |||||| | ||| |||| |  ||||||||  | ||||||||   |||||||||||||||| ||| |||| |||||||    |||||| ||    
T  28763303 taaaaatccaaactttgcaactgaacttttctctaatcacccataaaagttgattgaattaaacaactccctgtcggaacgatactctcctttattacta 28763204  T
Q  102 catcgataaaccgtgcacttgc 123  Q
    | ||||||||||||||||||||    
T  28763203 cttcgataaaccgtgcacttgc 28763182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 20449064 - 20449186
Alignment:
Q  8 aaaatcccaacttttcgacta-aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatc 105  Q
    ||||||| |||||||| |||  |||||||||||||||||| |||||||| |  ||||||  | |||||| ||| |||| ||||||| |||||| ||| ||    
T  20449064 aaaatcctaacttttcaacttgaactctcttctaatcattgttaaaagtcaattgaatt-cataactccctgtcggaacgatactctttattactacttc 20449162  T
Q  106 gataaaccgtgcacttgcggattt 129  Q
    | ||||| |||||||||| |||||    
T  20449163 ggtaaactgtgcacttgctgattt 20449186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 20534830 - 20534952
Alignment:
Q  8 aaaatcccaacttttcgacta-aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatc 105  Q
    ||||||| |||||||| |||  |||||||||||||||||| |||||||| |  ||||||  | |||||| ||| |||| ||||||| |||||| ||| ||    
T  20534830 aaaatcctaacttttcaacttgaactctcttctaatcattgttaaaagtcaattgaatt-cataactccctgtcggaacgatactctttattactacttc 20534928  T
Q  106 gataaaccgtgcacttgcggattt 129  Q
    | ||||| |||||||||| |||||    
T  20534929 ggtaaactgtgcacttgctgattt 20534952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 20400306 - 20400407
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||||||||||||   |||| |||| || |||||||| ||||| ||| |||| ||||||| |||||| ||| ||| ||| ||||||||||||||| ||    
T  20400306 ctctcttctaatcatctctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcggttt 20400405  T
Q  129 ta 130  Q
    ||    
T  20400406 ta 20400407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 20412941 - 20413045
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataaa-ccgtgcacttgcgga 126  Q
    |||||||| |||||||||| || |||||||  |||||| |  |||||| ||| |||| ||||||||| ||| ||| ||| |||| ||||||||||||||     
T  20412941 aaactctcatctaatcattatttaaagttaattgaattcat-aactccctgtcggaacgatactctttttactacttcggtaaaaccgtgcacttgcggt 20413039  T
Q  127 tttact 132  Q
    ||||||    
T  20413040 tttact 20413045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 11483285 - 11483155
Alignment:
Q  8 aaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcga 107  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||||  |||||||||||||||  ||| |||| ||||||||||||| |||| ||     
T  11483285 aaaatcccaacttttcaactgaactctcttctaatcattcataaaagttaattgaattaaacaactctctgtcggaacgatactcttattactacaccgg 11483186  T
Q  108 taaaccgtgcacttgcggatttactacatca 138  Q
    ||||| |||||| ||||||||||||||||||    
T  11483185 taaactgtgcacctgcggatttactacatca 11483155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4256051 - 4255912
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttatta 98  Q
    |||||||||||||| |||||||| ||| ||||  |||||||| |||| |||||||||  |||||||||||||||| |||||||| ||||  |||||  ||    
T  4256051 accgttaaaaatcctaacttttcaactgaacttccttctaataattcataaaagttaattgaattaaacaactccttgttggaacgataccctctttcta 4255952  T
Q  99 atacatcgataaaccgtgcacttgcggatttactacatca 138  Q
     ||| ||| |||||||||||||||||||||||||||||||    
T  4255951 ctacttcggtaaaccgtgcacttgcggatttactacatca 4255912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 4460218 - 4460088
Alignment:
Q  8 aaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcg 106  Q
    ||||||| |||||||| ||| ||||||| ||||||||||| || |||||||  |||||| |  |||||| ||| |||| ||||||||| ||| | | |||    
T  4460218 aaaatccaaacttttcaactcaaactcttttctaatcattgttgaaagttaattgaattcat-aactccctgtcggaacgatactctttttactgcttcg 4460120  T
Q  107 ataaaccgtgcacttgcggatttactacatca 138  Q
    ||||||||||||||||||||||||||||||||    
T  4460119 ataaaccgtgcacttgcggatttactacatca 4460088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 4541822 - 4541953
Alignment:
Q  4 gttaaaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaa-ttaaacaactccatgttggaatgatactc--ttattaa 99  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||  |||| || ||||||||| | ||| ||  ||||||  ||||||     
T  4541822 gttaaaaatcccaacttttcaactgaaactttcttctaatcattcataaaagttaattgaatttcaacaactccctattgaaacaatactcttttattac 4541921  T
Q  100 tacatcgataaaccgtgcacttgcggatttac 131  Q
    ||| |||  ||| |||||||||||||||||||    
T  4541922 tacttcggaaaatcgtgcacttgcggatttac 4541953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 17912334 - 17912380
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  17912334 ttattactacatcggtaaaccgtgcacttgcggatttactacatcat 17912380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 16896648 - 16896563
Alignment:
Q  50 aaaagttacctgaattaaacaactccatgttggaatgata--ctcttattaatacatcgata-aaccgtgcacttgcggatttact 132  Q
    ||||||||  |||||||||||||||||||||| |||||||  ||||| ||| ||| |||||| |||| ||||||||||| ||||||    
T  16896648 aaaagttaattgaattaaacaactccatgttgaaatgatactctcttcttattacttcgatagaaccatgcacttgcggttttact 16896563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 48354955 - 48354862
Alignment:
Q  37 tctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataa-accgtgcacttgcggattta 130  Q
    |||||||||| |||||||||| ||||||| |  |||||||||| |||| |||||| |||||| ||| ||| ||| ||||||||||||||| ||||    
T  48354955 tctaatcattgttaaaagttaactgaattcat-aactccatgtcggaacgatacttttattactacttcggtaagaccgtgcacttgcggtttta 48354862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 3375932 - 3375809
Alignment:
Q  8 aaaatcccaacttttcgactaaa-ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt-attaatacatc 105  Q
    ||||||| ||| |||| |||||| |||| ||||||||||| || |||||||  | |||| |  |||||| ||| |||| ||||||||| |||| ||||||    
T  3375932 aaaatccaaacctttcaactaaaactcttttctaatcattgttgaaagttaattaaattcat-aactccctgtcggaacgatactctttattactacatc 3375834  T
Q  106 gataaaccgtgcacttgcggattta 130  Q
    | |||||||||||||||||| ||||    
T  3375833 ggtaaaccgtgcacttgcggtttta 3375809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 38878147 - 38878225
Alignment:
Q  62 aattaaacaactccatgttggaatgatactct--tattaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    |||| |||||||| |||||||||  |||||||  | ||| ||| ||| |||||||||||||||||||||||| ||||||    
T  38878147 aattgaacaactcgatgttggaacaatactctatttttactacttcggtaaaccgtgcacttgcggatttacgacatca 38878225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 4465188 - 4465088
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt--attaatacatcgataaaccgtgcacttgcggattt 129  Q
    ||||||||||||||| |||| |||||  |||||| |  |||||| ||  ||||||||| ||||  |||| ||||||| ||||||||||||||||| ||||    
T  4465188 tctcttctaatcattgttaagagttaattgaattcat-aactccctgccggaatgataatcttttattactacatcggtaaaccgtgcacttgcgaattt 4465090  T
Q  130 ac 131  Q
    ||    
T  4465089 ac 4465088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 8521590 - 8521461
Alignment:
Q  5 ttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc--ttattaatac 102  Q
    ||||||||||||||||| | ||| ||  || ||||||||||     |||||||  |||||||||||||||| ||| |||| |||||||  |||||| |||    
T  8521590 ttaaaaatcccaactttgcaacttaaaccttttctaatcatcaactaaagttaattgaattaaacaactccttgtcggaacgatactcttttattactac 8521491  T
Q  103 atcgataaaccgtgcacttgcggatttact 132  Q
     | | |||||| |||||||||| |||||||    
T  8521490 tttggtaaaccatgcacttgcgaatttact 8521461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 17947439 - 17947532
Alignment:
Q  37 tctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataa-accgtgcacttgcggattta 130  Q
    |||||||||| ||||||||||  |||||| |  |||||||||| |||| |||||| |||||| ||| ||| ||| ||||||||||||||| ||||    
T  17947439 tctaatcattgttaaaagttaattgaattcat-aactccatgtcggaacgatacttttattagtacttcggtaagaccgtgcacttgcggtttta 17947532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 5907795 - 5907840
Alignment:
Q  167 gtcttgttaacgagtgctctatgacactctttaagcattcaaaatt 212  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||    
T  5907795 gtcttgttaacgagtgccctagggcactctttaagcattctaaatt 5907840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 14753459 - 14753560
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||||||||||||   |||| |||| || |||||||| ||||| ||| |||| ||||||| |||||| ||| ||| ||| ||||||||||||||| ||    
T  14753459 ctctcttctaatcatctctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcggttt 14753558  T
Q  129 ta 130  Q
    ||    
T  14753559 ta 14753560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 17205916 - 17205855
Alignment:
Q  70 aactccatgttggaatgatactcttattaatacatcgataaaccgtgcacttgcggatttac 131  Q
    |||||| |||||||| ||||   |||||| ||||||| |||||||||||||| |||||||||    
T  17205916 aactccttgttggaacgatatctttattactacatcggtaaaccgtgcacttccggatttac 17205855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 42646548 - 42646515
Alignment:
Q  165 gagtcttgttaacgagtgctctatgacactcttt 198  Q
    ||||||||||||||||||||| ||||||||||||    
T  42646548 gagtcttgttaacgagtgctccatgacactcttt 42646515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 8837248 - 8837351
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataaaccgtgcacttgcggat 127  Q
    ||||||| ||||||||||| || |||||||  |||||| |  |||||| ||| | ||  |||||||||||| ||  | | ||||||||||||||||||||    
T  8837248 aaactcttttctaatcattgttgaaagttaattgaattcat-aactccctgtcgaaacaatactcttattactattttggtaaaccgtgcacttgcggat 8837346  T
Q  128 ttact 132  Q
    |||||    
T  8837347 ttact 8837351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 521403 - 521543
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttatta 98  Q
    ||||||||||||||||||||||| ||| ||||  ||||||||||||| |||||||||  |||||||||||||||| |||||||| ||||  ||||| |||    
T  521403 accgttaaaaatcccaacttttcaactgaacttccttctaatcattcataaaagttaattgaattaaacaactccctgttggaacgatactctcttttta 521502  T
Q  99 atacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
     ||| ||| |||| |||||||||||||||||||||||||||    
T  521503 ctacttcgttaaatcgtgcacttgcggatttactacatcat 521543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 33625 - 33671
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||||    
T  33625 ttattactacatcggtaaaccatgcacttgcggatttactacatcat 33671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 38932 - 38978
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||||    
T  38932 ttattactacatcggtaaaccatgcacttgcggatttactacatcat 38978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 82046 - 81907
Alignment:
Q  1 accgttaaaaatcccaacttttcgacta-aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt--att 97  Q
    |||||||||||||| |||||| | |||  |||||| ||||||||||| |||||||| |  |||||| |  |||||| ||| |||| |||||||||  |||    
T  82046 accgttaaaaatcctaactttccaacttgaactcttttctaatcattgttaaaagtcaattgaattcat-aactccctgtcggaacgatactcttttatt 81948  T
Q  98 aatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    | ||| ||  ||||||||||||||| ||||||||| |||||    
T  81947 actacttcagtaaaccgtgcacttgaggatttacttcatca 81907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 24609500 - 24609365
Alignment:
Q  4 gttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaataca 103  Q
    |||||||||||||||||||| | | |||| |||||||||||||| |||| ||||  |||||||||||||||| ||| ||||   ||||||||||| ||||    
T  24609500 gttaaaaatcccaacttttcaagtgaactgtcttctaatcattcataaaggttaattgaattaaacaactccctgtcggaacagtactcttattactaca 24609401  T
Q  104 tcgataaaccgtgcacttgcggatttactacatcat 139  Q
     || ||||||||||||||||||||||||||||||||    
T  24609400 ccggtaaaccgtgcacttgcggatttactacatcat 24609365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 19012441 - 19012306
Alignment:
Q  5 ttaaaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt--attaata 101  Q
    |||||||||| |||||||| ||| ||||||| | ||||||||| || |||||||  |||||| |  ||||||||||   || |||||| ||  |||| ||    
T  19012441 ttaaaaatccaaacttttcaactcaaactctttgctaatcattgttgaaagttaattgaattcat-aactccatgtcaaaacgatactattttattacta 19012343  T
Q  102 catcgataaaccgtgcacttgcggatttactacatca 138  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19012342 catcggtaaaccgtgcacttgcggatttactacatca 19012306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 19121452 - 19121406
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||    
T  19121452 ttattactacatcagtaaaccgtgcacttgcggatttactacatcat 19121406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 20855235 - 20855189
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||||    
T  20855235 ttattactacatcggtaaaccgtgcacttgcagatttactacatcat 20855189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 24370773 - 24370736
Alignment:
Q  101 acatcgataaaccgtgcacttgcggatttactacatca 138  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24370773 acatcggtaaaccgtgcacttgcggatttactacatca 24370736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 15578581 - 15578641
Alignment:
Q  70 aactccatgttggaatgatactcttattaatacatcgataaaccgtgcacttgcggattta 130  Q
    |||||| ||| |||| ||||||||||||| ||| ||| |||||||| ||||||||||||||    
T  15578581 aactccctgtcggaacgatactcttattactacttcggtaaaccgtacacttgcggattta 15578641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 27074791 - 27074879
Alignment:
Q  5 ttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct 93  Q
    |||||||||| | |||| | |||||||| ||||||||||||   | |||||||  |||||| ||||||||| |||||||| ||||||||    
T  27074791 ttaaaaatccaatctttacaactaaactttcttctaatcatcaattaaagttaattgaattgaacaactccctgttggaacgatactct 27074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 23634646 - 23634693
Alignment:
Q  50 aaaagttacctgaattaaacaactccatgttggaatgatactcttatt 97  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||||    
T  23634646 aaaagttaattgaattaaacaactccttgtcggaatgatactcttatt 23634693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 24177076 - 24176994
Alignment:
Q  51 aaagttacctgaattaaacaactccatgttggaatgatactc--ttattaatacatcgata-aaccgtgcacttgcggattta 130  Q
    |||||||  |||||| ||||||||| ||| ||||||||||||  |||||| ||| |||||| |||||||||||||||| ||||    
T  24177076 aaagttaattgaattgaacaactccctgtcggaatgatactcttttattactacttcgatagaaccgtgcacttgcggtttta 24176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 20735 - 20693
Alignment:
Q  51 aaagttacctgaattaaacaactccatgttggaatgatactct 93  Q
    |||||||  ||||||||||||||||||||||||| ||||||||    
T  20735 aaagttaattgaattaaacaactccatgttggaacgatactct 20693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 24059620 - 24059756
Alignment:
Q  4 gttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttattaata 101  Q
    |||||||||||||||||||| |||||||| | |||||||||||| ||||| |||  |||||||||||||||| ||||||||  |||  ||||| ||| ||    
T  24059620 gttaaaaatcccaacttttcaactaaacttttttctaatcattcataaaatttaattgaattaaacaactccctgttggaacaatactctctttttacta 24059719  T
Q  102 catcgataaaccgtgcacttgcggatttactacatca 138  Q
    | ||| |||||||||||||||||||||||||||||||    
T  24059720 cttcggtaaaccgtgcacttgcggatttactacatca 24059756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 18008757 - 18008895
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaat 100  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||| |||| ||||  |||| ||||||||||| | | |||| ||||||||| ||| |    
T  18008757 accgttaaaaatcccaacttctcaactgaactctcttctaatcattcgtaaaggttaattgaaataaacaactccctatcggaacgatactctttttact 18008856  T
Q  101 acatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    || ||| |||| ||||||||||||||||| |||||||||    
T  18008857 acttcggtaaatcgtgcacttgcggatttgctacatcat 18008895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24342535 - 24342676
Alignment:
Q  1 accgttaaaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacct-gaattaaacaactccatgttggaatgatactctt-att 97  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| || ||||||  | ||||| ||||||||| |||  |||  |||||||| |||    
T  24342535 accgttaaaaatcccaacttttcaactgaaactcttttctaatcattcatagaagttaatttgaattcaacaactccctgtcagaacaatactctttatt 24342634  T
Q  98 aatacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    | ||||  | |||||| |||||||||||||||||||||||||    
T  24342635 actacactggtaaaccatgcacttgcggatttactacatcat 24342676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21320077 - 21320150
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactc 74  Q
    ||||||||||||||||||||||| | | |||||| ||||||||||||||||| ||||  |||||||||||||||    
T  21320077 accgttaaaaatcccaacttttcaattgaactctattctaatcattcttaaaggttaattgaattaaacaactc 21320150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 14156033 - 14155981
Alignment:
Q  86 gatactcttattaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    ||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||    
T  14156033 gatactctttttactacttcggtaaaccgtgcacttgcggatttactacatca 14155981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 21950817 - 21950916
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgata-aaccgtgcacttgcggattta 130  Q
    ||||||||||||||   |||| ||||  |||||| ||| ||||||||| |||| ||||||||| ||| ||| |||||| |||||||||||||||| ||||    
T  21950817 tctcttctaatcatctctaaaggttaattgaattgaactactccatgtcggaacgatactctttttactacttcgatagaaccgtgcacttgcggtttta 21950916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 26854755 - 26854867
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttattaatacatcgataaaccgtgcacttgcgg 125  Q
    ||||||| ||||||||||   |||||||||   ||||| ||||||||| |||||||| ||||  ||||| ||| ||| | | ||||| ||||||||||||    
T  26854755 aaactcttttctaatcatcaataaaagttaatcgaattgaacaactccttgttggaacgataatctctttttactactttggtaaactgtgcacttgcgg 26854854  T
Q  126 atttactacatca 138  Q
    ||||||| |||||    
T  26854855 atttactccatca 26854867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 21956619 - 21956718
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgata-aaccgtgcacttgcggattta 130  Q
    ||||||||||||||   |||| ||||  |||||| ||| ||||| ||| |||| ||||||||| ||| ||| |||||| |||||||||||||||| ||||    
T  21956619 tctcttctaatcatctctaaaggttaattgaattgaactactccctgtcggaacgatactctttttactacttcgatagaaccgtgcacttgcggtttta 21956718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 31469088 - 31469017
Alignment:
Q  67 aacaactccatgttggaatgatactcttattaatacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    ||||||||| |||||||| |||||| || ||| |||  ||| |||| ||||||||| ||||||||||||||||    
T  31469088 aacaactccctgttggaacgatactttt-ttactactccgacaaactgtgcacttgtggatttactacatcat 31469017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 22171451 - 22171585
Alignment:
Q  8 aaaatcccaacttttcgacta---aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaataca 103  Q
    |||||||||||||||| ||||   ||||||||||||||||||| ||| |||||  || ||| ||||||||||||| |||| ||||||| |||||| ||||    
T  22171451 aaaatcccaacttttcaactattaaactctcttctaatcattcataatagttaattggatttaacaactccatgtcggaacgatactctttattactaca 22171550  T
Q  104 tcgataaaccgtgcacttgcggatttactacatca 138  Q
    ||| |||||||||||||||| ||| ||||||||||    
T  22171551 tcgttaaaccgtgcacttgcagatctactacatca 22171585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 16677731 - 16677871
Alignment:
Q  1 accgttaaaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc--ttatt 97  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||| ||| | |||  |||| | ||||||||| |||||||| |||||||  ||| |    
T  16677731 accgttaaaaatcccaactttacaacttaaactctcttctaatcattcataataattaattgaactcaacaactccctgttggaacgatactcttttaat 16677830  T
Q  98 aatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    | ||||| | ||||| |||||||| ||||||||||||||||    
T  16677831 actacattggtaaactgtgcacttacggatttactacatca 16677871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 12411215 - 12411308
Alignment:
Q  36 ttctaatcattcttaa-aagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataaaccgtgcacttgcggatt 128  Q
    |||||||||||| ||| ||||||  |||||||||||||||| | |||||| ||||||| ||||| |||||   |||||||||||||||||||||    
T  12411215 ttctaatcattcataagaagttaattgaattaaacaactccctattggaacgatactcgtattactacattcgtaaaccgtgcacttgcggatt 12411308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 19890423 - 19890526
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc--ttattaatacatcgataaaccgtgcacttgcgg 125  Q
    ||||||| ||||||||||| || |||||||  |||||| |  |||||| ||| |||| |||||||  |||||| ||| ||||||||||||||||||||||    
T  19890423 aaactcttttctaatcattgttgaaagttaattgaattcat-aactccctgtcggaacgatactcgtttattactacttcgataaaccgtgcacttgcgg 19890521  T
Q  126 attta 130  Q
    |||||    
T  19890522 attta 19890526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 90545 - 90627
Alignment:
Q  51 aaagttacctgaattaaacaactccatgttggaatgatactct--tattaatacatcgata-aaccgtgcacttgcggattta 130  Q
    |||||||  ||||||||||||||||||||||||| ||||||||  | ||| ||| ||| || |||||||||||||||| ||||    
T  90545 aaagttaattgaattaaacaactccatgttggaacgatactctctttttactacttcggtagaaccgtgcacttgcggtttta 90627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 23342912 - 23342824
Alignment:
Q  36 ttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataa-accgtgcacttgcg 124  Q
    ||||||||||| ||||||| ||  |||||| | ||||||||||| |||| |||||| |||||| ||| ||| ||| ||||||||||||||    
T  23342912 ttctaatcattgttaaaagataattgaattca-caactccatgtcggaacgatacttttattactacttcggtaagaccgtgcacttgcg 23342824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 23626222 - 23626121
Alignment:
Q  32 tctcttctaatcat-tcttaaaagttacctgaattaaacaactccatgttggaatgatactcttat-taatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||||||||||| ||| ||||||||  |||||||||| ||||| ||| |||| ||||||||| | || ||| ||| ||| ||||||||||||||| ||    
T  23626222 tctcttctaatcatctctaaaaagttaattgaattaaactactccctgtcggaacgatactcttttatactacttcggtaagaccgtgcacttgcggttt 23626123  T
Q  129 ta 130  Q
    ||    
T  23626122 ta 23626121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 2112515 - 2112555
Alignment:
Q  167 gtcttgttaacgagtgctctatgacactctttaagcattca 207  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  2112515 gtcttgttaacgagtgccctcggacactctttaagcattca 2112555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 31415137 - 31415268
Alignment:
Q  4 gttaaaaatcccaacttttcgact-aaactctctt-ctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct--tattaa 99  Q
    |||||||||| ||||||| | ||| ||||||| || ||||||||   |||||||||  |||||| |||||||||  |||||||  |||||||  | |||     
T  31415137 gttaaaaatcacaactttgcaactgaaactctttttctaatcatcaataaaagttaattgaattgaacaactcccagttggaacaatactctctttttac 31415236  T
Q  100 tacatcgataaaccgtgcacttgcggatttac 131  Q
    ||| ||| |||||||||||||||| |||||||    
T  31415237 tacttcggtaaaccgtgcacttgcagatttac 31415268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 22237 - 22377
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctctt---ctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttatt 97  Q
    ||||||||||  || |||||||| |||||||| ||||   |||||||||| |||| ||||  |||||||||||||||| ||| |||||||||||||||||    
T  22237 accgttaaaatcccaaacttttcaactaaactttctttttctaatcattcataaaggttaattgaattaaacaactccctgtcggaatgatactcttatt 22336  T
Q  98 aatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    | |||| || ||||||||||||||  |||||||||| ||||    
T  22337 actacaccggtaaaccgtgcacttatggatttactatatca 22377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 11921882 - 11921742
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttct---aatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttatt 97  Q
    |||||||||||||| |||||||| |||||||| ||||||   |||||||| ||| |||||  |||||| ||||||||| ||| ||||  ||| |||| ||    
T  11921882 accgttaaaaatccaaacttttcaactaaactttcttcttctaatcattcataatagttaattgaattcaacaactccctgtcggaacaatagtcttttt 11921783  T
Q  98 aatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    | ||| ||| |||||||||||||||| ||||||||||||||    
T  11921782 actacttcggtaaaccgtgcacttgcagatttactacatca 11921742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 8561740 - 8561610
Alignment:
Q  8 aaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcg 106  Q
    ||||||| |||||||| ||| ||||||| ||||||||||| || |||||||  |||||| |  |||||||||| |||| ||||   |||||| ||||||     
T  8561740 aaaatccaaacttttcaactcaaactcttttctaatcattgttgaaagttaattgaattcat-aactccatgtcggaacgatatctttattactacatca 8561642  T
Q  107 ataaaccgtgcacttgcggatttactacatca 138  Q
     |||||||||||||||||||||||||||||||    
T  8561641 gtaaaccgtgcacttgcggatttactacatca 8561610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 33330447 - 33330317
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaa-ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt-atta 98  Q
    |||||||||| || ||||||||| |||||| ||||||||||||||||| || |||||   | |||| |  |||||||||| | || ||||||||| ||||    
T  33330447 accgttaaaactctcaacttttcaactaaaactctcttctaatcattcatagaagttgattaaattcat-aactccatgtcgaaacgatactctttatta 33330349  T
Q  99 atacatcgataaaccgtgcacttgcggattta 130  Q
     ||| ||| |||||||||||||||||||||||    
T  33330348 ctacttcggtaaaccgtgcacttgcggattta 33330317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 13882893 - 13882823
Alignment:
Q  67 aacaactccatgttggaatgatactcttattaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    ||||||||| ||||||||||||||| || ||| ||   || |||||||||||||||||||||||||||||||    
T  13882893 aacaactccctgttggaatgatactttt-ttactattccggtaaaccgtgcacttgcggatttactacatca 13882823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 11325612 - 11325744
Alignment:
Q  8 aaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt--attaatacat 104  Q
    ||||||| ||| |||| ||| ||||||| ||||||||||| || |||||||   ||||| |  |||| | ||| |||| |||||||||  |||| |||||    
T  11325612 aaaatccaaacgtttcaactcaaactcttttctaatcattgttgaaagttaatggaattcat-aacttcctgtcggaacgatactcttttattactacat 11325710  T
Q  105 cgataaaccgtgcacttgcggatttactacatca 138  Q
    || ||||||||||||||| |||||||||||||||    
T  11325711 cggtaaaccgtgcacttgtggatttactacatca 11325744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 25190867 - 25190976
Alignment:
Q  29 aactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt-attaatacatcgataaaccgtgcacttgcggat 127  Q
    ||||||| ||||||||||| | |||||||  |||||| |  |||| | ||| |||| ||||||||| |||| ||| ||| ||||||||||||||| ||||    
T  25190867 aactctcatctaatcattcatgaaagttaattgaattcat-aacttcctgtcggaacgatactctttattactacttcggtaaaccgtgcacttgtggat 25190965  T
Q  128 ttactacatca 138  Q
    |||||||||||    
T  25190966 ttactacatca 25190976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 21275952 - 21276044
Alignment:
Q  38 ctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataa-accgtgcacttgcggattta 130  Q
    ||||||||| |||||||||| ||||||| |  |||||| |||||||| |||||| |||||| ||| ||| ||| ||||||||||||||| ||||    
T  21275952 ctaatcattgttaaaagttaactgaattcat-aactccttgttggaacgatacttttattactacttcggtaagaccgtgcacttgcggtttta 21276044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 5676222 - 5676268
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttactacatcat 139  Q
    |||||| ||||||| |||||| |||||||||| ||||||||||||||    
T  5676222 ttattactacatcggtaaaccatgcacttgcgaatttactacatcat 5676268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 12845623 - 12845716
Alignment:
Q  37 tctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataa-accgtgcacttgcggattta 130  Q
    |||||||||| |||||||||| ||||||| |  |||||| ||| |||| |||||| |||||| ||| ||| ||| ||||||||||||||| ||||    
T  12845623 tctaatcattgttaaaagttaactgaattcat-aactccctgtcggaacgatacttttattactacttcggtaagaccgtgcacttgcggtttta 12845716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 23793373 - 23793328
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    |||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  23793373 ttattactacttcggtaaaccgtgcacttgcggatttacgacatca 23793328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 24546843 - 24546806
Alignment:
Q  167 gtcttgttaacgagtgctctatgacactctttaagcat 204  Q
    |||||||||||||||||||||  |||||||||||||||    
T  24546843 gtcttgttaacgagtgctctagaacactctttaagcat 24546806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 175586 - 175696
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttattaatacatcgataaaccgtgcacttgcgg 125  Q
    ||||||| ||||||||||   |||||||||  |||||||||||||||| |||||||| ||||  ||||| ||| ||| ||| |||| |||||||||||||    
T  175586 aaactcttttctaatcatcaataaaagttaattgaattaaacaactccttgttggaacgatactctctttttactacttcggtaaatcgtgcacttgcgg 175685  T
Q  126 atttactacat 136  Q
    |||||||||||    
T  175686 atttactacat 175696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 8532546 - 8532670
Alignment:
Q  3 cgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatac 102  Q
    |||||||||| |||||||||| ||| || | ||| |||||||||| |||||||||  |||||| || ||||||     |||| ||||||||||||| |||    
T  8532546 cgttaaaaattccaacttttcaactgaaatttctcctaatcattcataaaagttaattgaattcaaaaactccc----ggaacgatactcttattactac 8532641  T
Q  103 atcgataaaccgtgcacttgcggatttac 131  Q
    |||| |||| ||||||||||| |||||||    
T  8532642 atcggtaaatcgtgcacttgccgatttac 8532670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 20224666 - 20224533
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgata--ctcttatta 98  Q
    ||||||||||||||||||||||| | |||||||||||||||||||   ||||||| |  |||||| ||||| | ||||| |||| ||||  ||||| |||    
T  20224666 accgttaaaaatcccaacttttcaattaaactctcttctaatcatcaataaaagtgaattgaatt-aacaatttcatgtcggaacgatactctcttttta 20224568  T
Q  99 atacatcgata-aaccgtgcacttgcggatttact 132  Q
     ||| ||| || |||||||||||||||| ||||||    
T  20224567 ctacttcggtagaaccgtgcacttgcggttttact 20224533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 17775436 - 17775567
Alignment:
Q  1 accgttaaaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatact-cttatta 98  Q
    ||||||||||||||||| ||||| | | |||||||||||||||||||| || |||||   | ||||  | |||||| ||| |||| ||||||  ||||||    
T  17775436 accgttaaaaatcccaagttttcaagtgaaactctcttctaatcattcatagaagttgattaaatt-tataactccgtgtcggaacgatactatttatta 17775534  T
Q  99 atacatcgataaaccgtgcacttgcggatttac 131  Q
     ||| ||| ||||||||||||||||||||||||    
T  17775535 ttacttcggtaaaccgtgcacttgcggatttac 17775567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 19076737 - 19076868
Alignment:
Q  1 accgttaaaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatact-cttatta 98  Q
    ||||||||||||||||| ||||| | | |||||||||||||||||||| || |||||   | ||||  | |||||| ||| |||| ||||||  ||||||    
T  19076737 accgttaaaaatcccaagttttcaagtgaaactctcttctaatcattcatagaagttgattaaatt-tataactccgtgtcggaacgatactatttatta 19076835  T
Q  99 atacatcgataaaccgtgcacttgcggatttac 131  Q
     ||| ||| ||||||||||||||||||||||||    
T  19076836 ttacttcggtaaaccgtgcacttgcggatttac 19076868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 42243884 - 42243832
Alignment:
Q  86 gatactcttattaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    ||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||    
T  42243884 gatactctttttactacttcggtaaaccgtgcacttgcggatttactacatca 42243832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 47975506 - 47975599
Alignment:
Q  37 tctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgat-aaaccgtgcacttgcggattta 130  Q
    |||||||||| ||||||||||  |||||| || |||||| | |||||| ||||||||||||| ||| ||| | ||||||||||||||||| ||||    
T  47975506 tctaatcattgttaaaagttaattgaattcaa-aactccctattggaacgatactcttattactacttcggtaaaaccgtgcacttgcggtttta 47975599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 13419042 - 13419176
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatac--tcttatta 98  Q
    |||||||||||||| | |||| | ||| |||| |||||| |||||   ||||||||| |||| || ||||||||| |||||||| |||||  |||| |||    
T  13419042 accgttaaaaatccaatctttacaactgaactttcttctgatcatcaataaaagttaactgagttgaacaactccctgttggaacgatactatcttttta 13419141  T
Q  99 atacatcgata-aaccgtgcacttgcggatttact 132  Q
     ||| ||  || |||||||||||||||| ||||||    
T  13419142 ctacttcagtagaaccgtgcacttgcggttttact 13419176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 11848214 - 11848176
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttac 131  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  11848214 ttattactacatcggtaaaccgtgcacttgcggatttac 11848176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 8685187 - 8685142
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    |||||| |||||| ||||||||| ||||||||| ||||||||||||    
T  8685187 ttattactacatcaataaaccgtacacttgcgggtttactacatca 8685142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 10141731 - 10141832
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||||||||||||   |||| |||| || |||||||| ||||| ||| |||| ||||||| |||||| ||| ||| ||| ||||||||||||||| ||    
T  10141731 ctctcttctaatcatctctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcggttt 10141830  T
Q  129 ta 130  Q
    ||    
T  10141831 ta 10141832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 10148337 - 10148438
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||||||||||||   |||| |||| || |||||||| ||||| ||| |||| ||||||| |||||| ||| ||| ||| ||||||||||||||| ||    
T  10148337 ctctcttctaatcatctctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcggttt 10148436  T
Q  129 ta 130  Q
    ||    
T  10148437 ta 10148438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 10165723 - 10165622
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||||||||||||   |||| |||| || |||||||| ||||| ||| |||| ||||||| |||||| ||| ||| ||| ||||||||||||||| ||    
T  10165723 ctctcttctaatcatctctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcggttt 10165624  T
Q  129 ta 130  Q
    ||    
T  10165623 ta 10165622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 10850120 - 10850020
Alignment:
Q  34 tcttctaatcattct-taaaagttacctgaattaaacaactccatgttggaatgatactctt--attaatacatcgata-aaccgtgcacttgcggattt 129  Q
    ||||||||||||||| |||||||||  | |||| || |||||| ||||| || |||||||||  |||| |||| ||||| |||||||||||||||| |||    
T  10850120 tcttctaatcattctctaaaagttagttaaattgaataactccctgttgaaacgatactcttttattactacaccgatagaaccgtgcacttgcggtttt 10850021  T
Q  130 a 130  Q
    |    
T  10850020 a 10850020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 13192937 - 13192836
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt-attaatacatcgataa-accgtgcacttgcggatt 128  Q
    |||||| |||||||||  |||| |||| || |||||||| ||||| ||| |||| ||||||||| |||| ||| ||| ||| ||||||||||||||| ||    
T  13192937 ctctctcctaatcatttctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcggttt 13192838  T
Q  129 ta 130  Q
    ||    
T  13192837 ta 13192836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 40847158 - 40847264
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatac---tcttattaatacatcgataaaccgtgcacttgcg 124  Q
    |||||||| |||||||||||||||||||||  ||||||  | ||||| |||| |||| |||||   |||| ||| ||| ||| |||| |||||||| |||    
T  40847158 aaactctcatctaatcattcttaaaagttaattgaatt-cataactcgatgtcggaacgatactcatctttttactacttcggtaaatcgtgcactcgcg 40847256  T
Q  125 gatttact 132  Q
    ||||||||    
T  40847257 gatttact 40847264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 10159062 - 10158966
Alignment:
Q  31 ctctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactc-ttattaatacatcgataa-accgtgcacttgcgg 125  Q
    |||||||||||||||   |||| |||| || |||||||| ||||| ||| |||| ||||||| |||||| ||| ||| ||| |||||||||||||||    
T  10159062 ctctcttctaatcatctctaaaggttaactaaattaaactactccctgtcggaacgatactctttattactacttcggtaagaccgtgcacttgcgg 10158966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 13135098 - 13134998
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttat-taatacatcgataa-accgtgcacttgcggattt 129  Q
    ||||||||||||||   |||| ||||  |||||||||| ||||| |||||||| ||||||||| | || ||| ||| ||| ||||||||||||||| |||    
T  13135098 tctcttctaatcatctctaaaggttaattgaattaaactactccctgttggaacgatactcttttatactacttcggtaagaccgtgcacttgcggtttt 13134999  T
Q  130 a 130  Q
    |    
T  13134998 a 13134998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 37977711 - 37977617
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctt---attaatacatcgata-aaccgtgcacttg 122  Q
    ||||||||||||||   |||||||||  |||||||||  ||||||||| |||| |||||||||   |||| ||| |||||| |||||||||||||    
T  37977711 tctcttctaatcatcaataaaagttaattgaattaaattactccatgtcggaacgatactcttttcattattacttcgatagaaccgtgcacttg 37977617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 53672 - 53580
Alignment:
Q  1 accgttaaaaatcccaacttttcgactaaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct 93  Q
    |||||||||||||| |||||||| ||| |||| ||||||||||||   |||||||||  |||||| ||||| ||| | |||||||||||||||    
T  53672 accgttaaaaatcctaacttttcaactgaactttcttctaatcatcaataaaagttaattgaattgaacaaatccctcttggaatgatactct 53580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 22075 - 22032
Alignment:
Q  95 attaatacatcgataaaccgtgcacttgcggatttactacatca 138  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
T  22075 attactacatcggtaaaccgtgcacttgcggatttactacatca 22032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 14734 - 14790
Alignment:
Q  1 accgttaaaaatcccaacttttcgact-aaactctcttctaatcattcttaaaagtt 56  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||| || |||||    
T  14734 accgttaaaaatcccaacttttcaactgaaactctcttctaatcattcatagaagtt 14790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 3836 - 3795
Alignment:
Q  95 attaatacatcgataaaccgtgcacttgcggatttactacat 136  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  3836 attactacatcggtaaaccgtgcacttgcggatttactacat 3795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 6093 - 5998
Alignment:
Q  37 tctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgata-aaccgtgcacttgcggatttact 132  Q
    |||||||||| ||||||||||  |||||| |  |||||| ||| |||| ||||||||| ||| ||| |||||| |||||||||||||||| ||||||    
T  6093 tctaatcattgttaaaagttaattgaattcat-aactccctgtcggaacgatactctttttattacttcgatagaaccgtgcacttgcggttttact 5998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 6437 - 6536
Alignment:
Q  34 tcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctta--ttaatacatcgata-aaccgtgcacttgcggattta 130  Q
    ||||||||||||   |||||||||  |||||||||||||||| ||| |||| ||||||||||  ||| ||| |||||| |||||| ||||||||| ||||    
T  6437 tcttctaatcatcaataaaagttaattgaattaaacaactccctgtcggaacgatactcttattttactacttcgatagaaccgtacacttgcggtttta 6536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 16802 - 16759
Alignment:
Q  51 aaagttacctgaattaaacaactccatgttggaatgatactctt 94  Q
    |||||||  |||||||||||||||| ||||||||||||||||||    
T  16802 aaagttaattgaattaaacaactccctgttggaatgatactctt 16759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 56056 - 55955
Alignment:
Q  32 tctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactctta--ttaatacatcgat-aaaccgtgcacttgcggatt 128  Q
    ||||||||||||||    ||||||||  | |||| |||||||||||||||||| ||||||||||  ||| ||| ||||| ||||||| ||||||||| ||    
T  56056 tctcttctaatcatcaacaaaagttagttaaatttaacaactccatgttggaacgatactcttattttactacttcgataaaaccgtacacttgcggttt 55957  T
Q  129 ta 130  Q
    ||    
T  55956 ta 55955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 3924 - 3811
Alignment:
Q  28 aaactctcttctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactct--tattaatacatcgataaaccgtgcacttgcgg 125  Q
    ||||||| ||||||||||   ||||| |||  ||||| |||||| ||| |||||||| ||||||||  | ||| ||| | | |||  |||||||||||||    
T  3924 aaactcttttctaatcatcaataaaatttaattgaatcaaacaaatccctgttggaacgatactctctttttactactttggtaattcgtgcacttgcgg 3825  T
Q  126 atttactacatcat 139  Q
    ||||||||||||||    
T  3824 atttactacatcat 3811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 31866 - 31904
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttac 131  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  31866 ttattactacatcgataaaccgtacacttgcggatttac 31904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 49404 - 49311
Alignment:
Q  37 tctaatcattcttaaaagttacctgaattaaacaactccatgttggaatgatactcttattaatacatcgataa-accgtgcacttgcggattta 130  Q
    |||||||||| ||||||||||  |||||| |  |||||| ||| ||||||||||| |||||| ||| ||| ||| ||||||||||||||| ||||    
T  49404 tctaatcattgttaaaagttaattgaattcat-aactccctgtcggaatgatacttttattactacttcggtaagaccgtgcacttgcggtttta 49311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 168941 - 168979
Alignment:
Q  93 ttattaatacatcgataaaccgtgcacttgcggatttac 131  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  168941 ttattactacatcgataaaccgtgcacgtgcggatttac 168979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 250681 - 250608
Alignment:
Q  60 tgaattaaacaactccatgttggaatgatactc--ttattaatacatcgataa-accgtgcacttgcggattta 130  Q
    |||||||||| ||||| ||| ||||||||||||  |||||| ||| ||||||| ||||||||||||||| ||||    
T  250681 tgaattaaactactccttgtcggaatgatactcttttattactacttcgataagaccgtgcacttgcggtttta 250608  T

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