View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19430_low_3 (Length: 531)

Name: NF19430_low_3
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19430_low_3
NF19430_low_3
[»] chr2 (7 HSPs)
chr2 (82-263)||(17281228-17281423)
chr2 (343-447)||(17281503-17281607)
chr2 (433-512)||(17281624-17281703)
chr2 (438-512)||(1551273-1551347)
chr2 (433-508)||(4140765-4140840)
chr2 (433-512)||(17375638-17375717)
chr2 (440-510)||(4869953-4870022)
[»] chr4 (4 HSPs)
chr4 (433-510)||(47518129-47518206)
chr4 (433-512)||(53202631-53202710)
chr4 (433-509)||(23053914-23053990)
chr4 (177-236)||(5923993-5924053)
[»] chr5 (8 HSPs)
chr5 (433-512)||(7766683-7766762)
chr5 (433-512)||(41355224-41355303)
chr5 (437-512)||(18697291-18697366)
chr5 (439-510)||(26657073-26657147)
chr5 (439-510)||(26928661-26928735)
chr5 (439-510)||(6030074-6030145)
chr5 (444-506)||(7272142-7272204)
chr5 (352-390)||(15954968-15955006)
[»] chr1 (2 HSPs)
chr1 (439-510)||(616069-616140)
chr1 (433-512)||(34118337-34118416)
[»] chr8 (1 HSPs)
chr8 (433-512)||(10409189-10409268)
[»] chr6 (2 HSPs)
chr6 (433-512)||(20740952-20741031)
chr6 (436-512)||(21881833-21881909)
[»] chr3 (2 HSPs)
chr3 (439-510)||(18269533-18269604)
chr3 (356-392)||(31708166-31708202)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 82 - 263
Target Start/End: Original strand, 17281228 - 17281423
Alignment:
Q  82 tgaaaaatattcaatatatgagtcatctttcatatttattcgttattagattattcatagttgtacgtgtttagcttcacttttagaattctt------- 174  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  17281228 tgaaaaatattcaatatatgagtcatctttcatattttttcgttattagattattcatagttgtacgtgtttagcttcacttttagaattcttggaagta 17281327  T
Q  175 tt-------tgtcaaaaacaattctaactctaaaaattatgtttagcatttttatgagaaatcaatttttgaggacataaaacaattataattgaa 263  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  17281328 ttttacaagtgtcaaaaacaattctaactctaaaaattatgtttagcatttttatgagaaatcaatttttgaggacttaaaacaattatacttgaa 17281423  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 343 - 447
Target Start/End: Original strand, 17281503 - 17281607
Alignment:
Q  343 cctcatctacaaatcacttttactccgaatcaattttacaaaatcaattcctttctttctttctaaacctagtggtccaatagaaaatagccgccgtact 442  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17281503 cctcatctacaaatcacttttactccgaatcaattttaagaaatcaattcctttctttctttctaaacctagtggtccaatagaaaatagccgtcgtact 17281602  T
Q  443 ccttt 447  Q
    |||||    
T  17281603 ccttt 17281607  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 433 - 512
Target Start/End: Original strand, 17281624 - 17281703
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17281624 ccgccgtactcctttcttcctcgcataaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 17281703  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 438 - 512
Target Start/End: Original strand, 1551273 - 1551347
Alignment:
Q  438 gtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  1551273 gtactcctttcttcctcacacaaattccaaatctgtcgtcatcatcatgtagatcaaatggatggtggtgcgacg 1551347  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 4140840 - 4140765
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgc 508  Q
    |||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  4140840 ccgccgtacttctttcttcctcacacaaattccaaatccgccgttgtcatcatgtagatcaaatggatggtggtgc 4140765  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 512
Target Start/End: Complemental strand, 17375717 - 17375638
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    ||||||||||||||| | ||||||| |||||| ||||  | ||  | |||||||| ||||||||||||||||||||||||    
T  17375717 ccgccgtactcctttttgcctcacacaaattctaaattcgtcgctgccatcatgtggatcaaatggatggtggtgcgacg 17375638  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 4870022 - 4869953
Alignment:
Q  440 actcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcga 510  Q
    |||||||||||||||||| |||||  ||||| | || || | |||||||||||||||||||||||||||||    
T  4870022 actcctttcttcctcacacaaattttaaatccgtcg-cgccgtcatgtagatcaaatggatggtggtgcga 4869953  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 433 - 510
Target Start/End: Original strand, 47518129 - 47518206
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcga 510  Q
    ||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47518129 ccgccgtacccctttctttctcacacaaattccaaatctgccgccgtcatcatgtagatcaaatggatggtggtgcga 47518206  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 433 - 512
Target Start/End: Complemental strand, 53202710 - 53202631
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    ||||||||||||||||||||||||| |||||  ||||| |||  ||||||||||||||||||||||||||||||||||||    
T  53202710 ccgccgtactcctttcttcctcacacaaattttaaatccgcccccgtcatcatgtagatcaaatggatggtggtgcgacg 53202631  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 509
Target Start/End: Original strand, 23053914 - 23053990
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcg 509  Q
    ||||||||||| |||| |||||||| |||||| |||||  ||| || ||||||||||||||| ||||||||||||||    
T  23053914 ccgccgtactcttttcatcctcacacaaattctaaatccaccgccgccatcatgtagatcaactggatggtggtgcg 23053990  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 5924053 - 5923993
Alignment:
Q  177 tgtcaaaaacaattctaactcta-aaaattatgtttagcatttttatgagaaatcaatttt 236  Q
    ||||| || |||||||||||||| |||||||||||||| |||||| ||| |||| ||||||    
T  5924053 tgtcataagcaattctaactctataaaattatgtttagtatttttttgaaaaattaatttt 5923993  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 433 - 512
Target Start/End: Original strand, 7766683 - 7766762
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    ||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  7766683 ccgccgtactcctttcttcctcacacaaattccaaatccgccgccgccatcatgtagatctaatggatggtggtgcgacg 7766762  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 433 - 512
Target Start/End: Original strand, 41355224 - 41355303
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    |||| |||||||||||||||||||| |||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  41355224 ccgcggtactcctttcttcctcacacaaattctaaatttgtcgtcgtcatcatgtagatcaaatggatggtggtgcgacg 41355303  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 437 - 512
Target Start/End: Complemental strand, 18697366 - 18697291
Alignment:
Q  437 cgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    ||||||||||||||||||||| ||||| |||||| |||| || ||||| |||||||||||||||||||||||||||    
T  18697366 cgtactcctttcttcctcacacaaatttcaaatccgccgccgccatcacgtagatcaaatggatggtggtgcgacg 18697291  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 26657147 - 26657073
Alignment:
Q  439 tactcctttcttcctcacagaaattccaaatct---gccgtcgtcatcatgtagatcaaatggatggtggtgcga 510  Q
    ||||||||||||||||||| |||||||||||||   | ||||||| |||||||||||||||||||||||||||||    
T  26657147 tactcctttcttcctcacacaaattccaaatctgtcgtcgtcgtcgtcatgtagatcaaatggatggtggtgcga 26657073  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 26928735 - 26928661
Alignment:
Q  439 tactcctttcttcctcacagaaattccaaatct---gccgtcgtcatcatgtagatcaaatggatggtggtgcga 510  Q
    ||||||||||||||||||| |||||||||||||   | ||||||| |||||||||||||||||||||||||||||    
T  26928735 tactcctttcttcctcacacaaattccaaatctgtcgtcgtcgtcgtcatgtagatcaaatggatggtggtgcga 26928661  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 439 - 510
Target Start/End: Original strand, 6030074 - 6030145
Alignment:
Q  439 tactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcga 510  Q
    ||||||||||||||||||| |||||||||||  | || || |||||| ||||||||||||||||||||||||    
T  6030074 tactcctttcttcctcacacaaattccaaattcgtcgccgccatcatatagatcaaatggatggtggtgcga 6030145  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 7272204 - 7272142
Alignment:
Q  444 ctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggt 506  Q
    |||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||    
T  7272204 ctttcttcctcacacaaattccaaatccgtcgtcgccgtcatgtagatcaaatggatggtggt 7272142  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 15955006 - 15954968
Alignment:
Q  352 caaatcacttttactccgaatcaattttacaaaatcaat 390  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  15955006 caaatcacttttaatccgattcaattttacaaaatcaat 15954968  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 616140 - 616069
Alignment:
Q  439 tactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcga 510  Q
    ||||||||||||||||||| ||||||||||||  |||||| | |||||||||||||||||||||||||||||    
T  616140 tactcctttcttcctcacacaaattccaaatccaccgtcgccgtcatgtagatcaaatggatggtggtgcga 616069  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 433 - 512
Target Start/End: Complemental strand, 34118416 - 34118337
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    ||||||||||||||||||||||||| |||||| |||||  |||||| ||| ||||||||||||| |||||||||||||||    
T  34118416 ccgccgtactcctttcttcctcacacaaattctaaatcccccgtcggcataatgtagatcaaatagatggtggtgcgacg 34118337  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 433 - 512
Target Start/End: Complemental strand, 10409268 - 10409189
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    |||||| |||||||| ||||||| | |||||| ||||| |||| || |||||||||||||||||||||||||||||||||    
T  10409268 ccgccgcactccttttttcctcaaacaaattctaaatccgccgccgccatcatgtagatcaaatggatggtggtgcgacg 10409189  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 433 - 512
Target Start/End: Complemental strand, 20741031 - 20740952
Alignment:
Q  433 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    |||| |||||||||||||||||||| |||||  ||||| || |  |||||||||||||||||||||||||||||||||||    
T  20741031 ccgctgtactcctttcttcctcacacaaattttaaatccgctgctgtcatcatgtagatcaaatggatggtggtgcgacg 20740952  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 512
Target Start/End: Complemental strand, 21881909 - 21881833
Alignment:
Q  436 ccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacg 512  Q
    ||||||| ||||||||||| || ||||| |||||||| || ||  ||||||||||||||||||||||||||||||||    
T  21881909 ccgtactactttcttcctctcataaattacaaatctgtcgccgcaatcatgtagatcaaatggatggtggtgcgacg 21881833  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 439 - 510
Target Start/End: Original strand, 18269533 - 18269604
Alignment:
Q  439 tactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcga 510  Q
    ||||||||||| ||||||| |||||||||||| | ||||| |||||||||||||||||| ||||||||||||    
T  18269533 tactcctttctccctcacacaaattccaaatccgtcgtcgccatcatgtagatcaaatgaatggtggtgcga 18269604  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 31708202 - 31708166
Alignment:
Q  356 tcacttttactccgaatcaattttacaaaatcaattc 392  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  31708202 tcacttttagtcctaatcaattttacaaaatcaattc 31708166  T

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