View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19430_low_4 (Length: 506)
Name: NF19430_low_4
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 12007726 - 12007864
Alignment:
| Q |
18 |
cttcaaagctgcatcctttccttttttgtctttaacatatagtcaccttttcttcatcaaacacacataacatgcttgtcgtcatttcggaatacatctg |
117 |
Q |
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| T |
12007726 |
cttcaaaactgcatcctttccttttttgtctttaacatatagtcaccttttcttcatcaaacacacataacatgcttgtcgtcatttcggaatacatctg |
12007825 |
T |
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| Q |
118 |
ttaatttaatgagtactcgctgttaacattactaatttt |
156 |
Q |
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| T |
12007826 |
ttaatttaatgaggactcactgttaaaattactaatttt |
12007864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 12020668 - 12020774
Alignment:
| Q |
18 |
cttcaaagctgcatcctttccttttttgtctttaacatatagtcaccttttcttcatcaaacacacataacatgcttgtcgtcatttcggaatacatctg |
117 |
Q |
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| T |
12020668 |
cttcaaacctgcatcctttcctttttagtctttaacatatagtcaccttttcttcatcaaatgcacataacatgcttgtcatcatttctaaatacatctg |
12020767 |
T |
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| Q |
118 |
ttaattt |
124 |
Q |
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| T |
12020768 |
ttaattt |
12020774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 337 - 496
Target Start/End: Original strand, 11990964 - 11991123
Alignment:
| Q |
337 |
caatcaatccattttgttt-ataggtaaaaggaatatcattctggacaggtttagcaaagcagattgaagtcaggaactaattggttagggtgccaagag |
435 |
Q |
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| T |
11990964 |
caatcaacccattttgttttataggtaaaac-aataacattctgcataaatttagcaatacagattgaagtcaagaactaactagttaggtttccatgaa |
11991062 |
T |
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| Q |
436 |
ataaaccatgtattgaaaatatttagaaaaatacaaagtaaaaatcacaactgtgatgatg |
496 |
Q |
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| T |
11991063 |
ataaaccatgcataaaaaatatttagaaaaatacaaagtaaaaaacacaactgtgatgatg |
11991123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 330 - 495
Target Start/End: Original strand, 12021010 - 12021175
Alignment:
| Q |
330 |
caaccaacaatcaatccattttgtttataggtaaaaggaatatcattctggacaggtttagcaaagcagattgaagtcaggaactaattggttagggtgc |
429 |
Q |
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| T |
12021010 |
caaccaacaatcaacccaatttgtttatatgcaaaagcaacaacattctgcataaatttaccagtacagattgaagtcaagaactaactagttaggtttc |
12021109 |
T |
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| Q |
430 |
caagagataaaccatgtattgaaaatatttagaaaaatacaaagtaaaaatcacaactgtgatgat |
495 |
Q |
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| T |
12021110 |
caagaaataaaccatgcatagaaaatattttgaaaaatacaaagtgaaaaacacaactgtgatgat |
12021175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 11990576 - 11990638
Alignment:
| Q |
18 |
cttcaaagctgcatcctttccttttttgtcttt-aacatatagtcaccttttcttcatcaaac |
79 |
Q |
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| T |
11990576 |
cttcaaacctgcatccttcccctcttcgtcttttaacatatagtcaccttttcttcataaaac |
11990638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 12020820 - 12020864
Alignment:
| Q |
138 |
tgttaacattactaattttgcaaattaataattttttgtgatctt |
182 |
Q |
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| T |
12020820 |
tgttaacattatcatctttgcaaattaataattttttgtgatctt |
12020864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 443
Target Start/End: Complemental strand, 43498049 - 43497936
Alignment:
| Q |
330 |
caaccaacaatcaatccattttgtttataggtaaaaggaatatcattctggacaggtttagcaaagcagattgaagtcaggaactaattggttagggtgc |
429 |
Q |
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| T |
43498049 |
caaccaacaatcaacccattttgtttataggtaaaagcaataacattctgcataaatttagcaatacagattgaagttaagaactaactagttaggtttc |
43497950 |
T |
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| Q |
430 |
caagagataaacca |
443 |
Q |
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| T |
43497949 |
caagaactaaacca |
43497936 |
T |
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