View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19430_low_5 (Length: 497)
Name: NF19430_low_5
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Complemental strand, 45344966 - 45344495
Alignment:
| Q |
20 |
actcccaattaattgcttgtaagcagtagcatccaccctaacaccttctccattctttgacagcttaaatccaggaactataggattcttaacagagtta |
119 |
Q |
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| T |
45344966 |
actcccaattaattgcttgtaagcagtagcatccaccctaacaccttctccattctttgacagcttaaatccaggaactataggattcttaacagagtta |
45344867 |
T |
|
| Q |
120 |
caattctgcaatccaaacttttcaagtagctcataagcatatttcttctgacttaagtatatgccgtctgaattttgcagaacttctacaccaaggaaat |
219 |
Q |
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| T |
45344866 |
caattctgcaatccaaacttttcaagtagctcataagcatatttcttctgacttaagtatatgccgtctgaattttgcagaacttctacaccaaggaaat |
45344767 |
T |
|
| Q |
220 |
atttcatcttccctaaatccgtcatatcaaactcaatcttcattgacatcttaaagctttcaaacatgcatgcatcattcccagtaaagattaaatcatc |
319 |
Q |
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| T |
45344766 |
atttcatcttccctaaatccgtcatatcaaactcaatcttcattgacatcttaaagctttcaaacatgcatgcatcattcccagtaaagattaaatcatc |
45344667 |
T |
|
| Q |
320 |
aacatacaaactcacaattaaaattcttttacctcctgttttgacaaagagagtatgatcatgattgcatctttcaaatcattccttagcaaaatatgat |
419 |
Q |
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| T |
45344666 |
aacatacaaactcacaattaaaattcttttacctcctgttttgacaaagagagtatgatcatgattgcatctttcaaatcattccttagcaaaatatgat |
45344567 |
T |
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| Q |
420 |
tcaattttactatatcaagctcgcggtgcttgctttaacccatataaagctttcttaagcttgtagaccttt |
491 |
Q |
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| T |
45344566 |
tcaattttactatatcaagctcgtggtgcttgctttaacccatataaagctttcttaagcttgtagaccttt |
45344495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 472
Target Start/End: Original strand, 10781926 - 10781979
Alignment:
| Q |
419 |
ttcaattttactatatcaagctcgcggtgcttgctttaacccatataaagcttt |
472 |
Q |
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||||||||||||||| ||||||| || ||||||||||| |||||||||||||| |
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| T |
10781926 |
ttcaattttactataccaagctcttggagcttgctttaaaccatataaagcttt |
10781979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 1154906 - 1154953
Alignment:
| Q |
292 |
catcattcccagtaaagattaaatcatcaacatacaaactcacaatta |
339 |
Q |
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||||||| |||||||| || |||||||||||||||||||| ||||||| |
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| T |
1154906 |
catcattgccagtaaatatcaaatcatcaacatacaaacttacaatta |
1154953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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