View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19430_low_6 (Length: 479)

Name: NF19430_low_6
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19430_low_6
NF19430_low_6
[»] chr1 (8 HSPs)
chr1 (16-470)||(30620754-30621208)
chr1 (112-439)||(30616034-30616361)
chr1 (146-265)||(16183800-16183919)
chr1 (149-265)||(16175443-16175559)
chr1 (146-265)||(16223190-16223309)
chr1 (146-264)||(33108900-33109018)
chr1 (144-258)||(33114936-33115050)
chr1 (173-249)||(9700035-9700111)
[»] chr7 (2 HSPs)
chr7 (143-435)||(38883805-38884097)
chr7 (143-297)||(38892997-38893151)
[»] chr3 (1 HSPs)
chr3 (161-250)||(37316173-37316262)
[»] chr5 (1 HSPs)
chr5 (170-250)||(19207037-19207117)


Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 30621208 - 30620754
Alignment:
Q  16 cacatgttagcatggattcaatgatcttttgtttataaaattaaggtacgtaatttgttttttaagaggggaatatcattatttacaggcactaggaaaa 115  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30621208 cacatgttagcatggatttaatgatcttttgtttataaaaataaggtacgtaatttgttttttaagcggggaatatcattatttacaggcactaggaaaa 30621109  T
Q  116 cattgaggcatggctaaggagaatctccaggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30621108 cattgaggcatggctaaggagaatctccaggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgg 30621009  T
Q  216 gcttcttcaccgatgcatacgatctattctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30621008 gcttcttcaccgatgcatacgatctattctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatc 30620909  T
Q  316 gttgccaccaaacgttgcagcagcagttaatggcgttgcttttgttgggacactttctggacaactctttttcggctggctcggtgacaaactaggccgt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30620908 gttgccaccaaacgttgcagcagcagttaatggcgttgcttttgttgggacactttctggacaactcttcttcggctggctcggtgacaaactaggccgt 30620809  T
Q  416 aaaaaagtctatggcatgactctagctgttatggttgtttgttccacaggttctg 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30620808 aaaaaagtctatggcatgactctagctgttatggttgtttgttccataggttctg 30620754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 112 - 439
Target Start/End: Complemental strand, 30616361 - 30616034
Alignment:
Q  112 aaaacattgaggcatggctaaggagaatctccaggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctgga 211  Q
    |||||||||||||||||| | ||||||||||  |||||||| ||||||||||||||| | ||||||||| |||||||| |||||||||| |||  |||||    
T  30616361 aaaacattgaggcatggcaagggagaatctcagggtgctaagtgcactagatgtagcaagaacacaatgttaccattttacagcaattgccattactgga 30616262  T
Q  212 atgggcttcttcaccgatgcatacgatctattctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccag 311  Q
     |||||||||||||| ||||||| |||||||| |||||||| ||||| |||| |||||||||||| || || ||| ||||||| ||||||||| |||| |    
T  30616261 ctgggcttcttcaccaatgcatatgatctattttgcatatcgcttgttacaaggctactcggtcgtatatattactatgtcgacggagctgaagagcctg 30616162  T
Q  312 gatcgttgccaccaaacgttgcagcagcagttaatggcgttgcttttgttgggacactttctggacaactctttttcggctggctcggtgacaaactagg 411  Q
    || | ||||||||||||||||||||| ||||||| ||| | ||||| ||||| ||| || | ||||||||||| ||||||||||||||||||||||||||    
T  30616161 gaacattgccaccaaacgttgcagcaacagttaacggcctcgctttagttggaacatttaccggacaactcttcttcggctggctcggtgacaaactagg 30616062  T
Q  412 ccgtaaaaaagtctatggcatgactcta 439  Q
    ||||| || ||||||||| || ||||||    
T  30616061 ccgtagaacagtctatggaatcactcta 30616034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 16183800 - 16183919
Alignment:
Q  146 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 245  Q
    ||||| |||||||| ||||| || || || |||| ||||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||| ||||    
T  16183800 gtgcttaatgcactcgatgtcgcaaagacgcaattgtaccatttcactacaattgtgatagctggaatgggattcttcactgatgcatatgatcttttct 16183899  T
Q  246 gcatatcccttgtcacaaag 265  Q
    |||| |||||||||||||||    
T  16183900 gcatttcccttgtcacaaag 16183919  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 16175559 - 16175443
Alignment:
Q  149 ctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgca 248  Q
    ||||||||||||||||| || || ||||||| ||||||||||||  ||||||| |||||||||||||| |||||||| ||||| || ||||| |||||||    
T  16175559 ctaaatgcactagatgtggcaaagacacaattgtaccatttcactacaattgtgatagctggaatgggtttcttcactgatgcttatgatcttttctgca 16175460  T
Q  249 tatcccttgtcacaaag 265  Q
    | || ||||| ||||||    
T  16175459 tttctcttgttacaaag 16175443  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 16223190 - 16223309
Alignment:
Q  146 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 245  Q
    |||||||||||||| ||||| || || ||||||| ||| || |||||  ||||||| || ||||||||||| |||||||| |||||||| ||||| ||||    
T  16223190 gtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatcttttct 16223289  T
Q  246 gcatatcccttgtcacaaag 265  Q
    |||| |||||||||||||||    
T  16223290 gcatttcccttgtcacaaag 16223309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 33108900 - 33109018
Alignment:
Q  146 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 245  Q
    ||||| |||||||| ||||| ||||| ||||||  ||||||||||||||||||||| || ||||||||||| || ||||| ||||| || ||||| || |    
T  33108900 gtgcttaatgcactcgatgtggcgaagacacaaatgtaccatttcacagcaattgtgattgctggaatgggttttttcactgatgcctatgatctctttt 33108999  T
Q  246 gcatatcccttgtcacaaa 264  Q
    |||| ||||||||||||||    
T  33109000 gcatttcccttgtcacaaa 33109018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 33114936 - 33115050
Alignment:
Q  144 aggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctatt 243  Q
    ||||||| |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||| || ||||| ||| | || ||||| ||    
T  33114936 aggtgcttaatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctctt 33115035  T
Q  244 ctgcatatcccttgt 258  Q
    |||||| ||||||||    
T  33115036 ctgcatttcccttgt 33115050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 9700111 - 9700035
Alignment:
Q  173 acacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcat 249  Q
    ||||||||||||||| | ||||| || || || ||||| ||||| |||||||| ||||| || ||||| ||||||||    
T  9700111 acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctgcat 9700035  T

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Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 143 - 435
Target Start/End: Original strand, 38883805 - 38884097
Alignment:
Q  143 caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctat 242  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||||| |||||  |||||||||| ||||| ||||| || ||||| || ||||| |    
T  38883805 caggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgt 38883904  T
Q  243 tctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcagcagcagt 342  Q
    ||||  |||||||||| |||||| | ||||||||||| |||||||| || ||||| ||||  ||||| ||  | ||||| || || ||  |||| || ||    
T  38883905 tctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgtatcagctgctgt 38884004  T
Q  343 taatggcgttgcttttgttgggacactttctggacaactctttttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgac 435  Q
     ||||| || |||||   ||| |||||||| || ||||| || || |||||||| ||||| ||  | ||| | |||||||||||||| |||||    
T  38884005 gaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgac 38884097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 38892997 - 38893151
Alignment:
Q  143 caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctat 242  Q
    ||||||||||||||||| ||||| |||||||| |||||||| || |||||||||||  |||| ||||||||||| ||||| || ||||| || ||||| |    
T  38892997 caggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgatctgt 38893096  T
Q  243 tctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatgg 297  Q
    |||||||||||||||| || ||| | || || ||||| || |||||||| |||||    
T  38893097 tctgcatatcccttgttaccaagttgctgggacgcatatattaccatgttgatgg 38893151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 37316262 - 37316173
Alignment:
Q  161 gatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 250  Q
    |||| ||| |||||||||||||||||||||||||| ||  | || ||||| ||||| |||||||| |||||||| || || |||||||||    
T  37316262 gatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcata 37316173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 19207037 - 19207117
Alignment:
Q  170 aaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 250  Q
    |||||||||||||||| ||||||||| ||  | || ||||| ||||| |||| ||| |||||||| || || |||||||||    
T  19207037 aaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacagatgcatatgaccttttctgcata 19207117  T

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