View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19430_low_8 (Length: 432)
Name: NF19430_low_8
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 11194432 - 11194847
Alignment:
| Q |
1 |
gttattaggttgattaaggatgttggtgttggaagtgagatttgtataagctatttcaggattaataaggattattcaacaaggaaaaagattttaatgg |
100 |
Q |
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| T |
11194432 |
gttattaggttgattaaggatgttggtgttggaagtgagatttgtataagctattttaggattaataaggattattcaacaaggaaaaagattttaatgg |
11194531 |
T |
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| Q |
101 |
aggattatggttttacttgtgaatgtgataggtgcaagattgaagcaaattggaatgatggagagaacaagtacagtgatctgccacatgtgattttctt |
200 |
Q |
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| T |
11194532 |
aggattatggttttacttgtgaatgtgataggtgcaagattgaagcaagttggaatgatggagagaacaagtacagtgatctgccacatgtgattttctt |
11194631 |
T |
|
| Q |
201 |
atctaagtttgtttgtgataaggagaattgtgcaggtactatggctcctctgcctccaaaagatggtgaaaaatctaacgttcttgagtgtaatttttgt |
300 |
Q |
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| T |
11194632 |
atctaagtttgtttgtgataaggagaattgtgcaggtactatggctcctctgcctccaaaagatggtgaaaaatctaacgttcttgagtgtaatttttgt |
11194731 |
T |
|
| Q |
301 |
ggtaatttgaaagttgaccttgctacttaggtcttatttggattggtttatctgagctactatgtacttgtataagcattttgtgagactgtttatggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11194732 |
ggtaatttgaaagttgaccttgctacttaggtcttatttggattggtttatctgagctactatgtacttgtataagcattttgtgagactgtttatggaa |
11194831 |
T |
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| Q |
401 |
acaatattgcaattat |
416 |
Q |
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| T |
11194832 |
acaatattgcaattat |
11194847 |
T |
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