View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_high_1 (Length: 491)
Name: NF19431_high_1
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Original strand, 293503 - 293966
Alignment:
| Q |
10 |
ataattctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctcta |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293503 |
ataattctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctcta |
293602 |
T |
|
| Q |
110 |
tgaacaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgcctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293603 |
tgaacaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgcctt |
293702 |
T |
|
| Q |
210 |
gcaacacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatcggcaagagtacgatctccctgtgatatggataactc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
293703 |
gcaacacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatctgcaagagtacgatctccctgtgatatggataactc |
293802 |
T |
|
| Q |
310 |
tccaattagtgtatgttaaggaatgaacagaccagattcagatgataaattaagataacatttaaaaccacctaaatgaagtacaggtaataaaacttta |
409 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
293803 |
tccaattagtgcatgttaaggaatgaacagaccagattcagatgataaattaagataacatttaaaaccacctaaatgaagtacaagtaataaaacttta |
293902 |
T |
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| Q |
410 |
gacatttgagtaatttatgtctgggtaatttaaggctattaatgttaaataatacgatcgaaat |
473 |
Q |
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| T |
293903 |
gacatttgagtaatttatgtctgggtaatttaaggctattaatgttaaataatacgatcaaaat |
293966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 27492544 - 27492235
Alignment:
| Q |
10 |
ataattctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctcta |
109 |
Q |
| |
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|||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||| | ||| || || || ||||||| ||||||| ||| || |
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| T |
27492544 |
ataattctttccaattctaaggtctgttgctgcaccaaaatcaatgagtttaatctgccctttttttgtaacaaccaagttggaaggctttacatccctg |
27492445 |
T |
|
| Q |
110 |
tgaacaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgcctt |
209 |
Q |
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||||| ||||| || || ||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||| | | ||||| |||| |||| |
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| T |
27492444 |
tgaacgatgccagtgtcgtgaattttcttaagagatgtaatgatttggcgcattatttgcttgatgatcaatgcatttctttttgaagagtctatacctt |
27492345 |
T |
|
| Q |
210 |
gcaacacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatcggcaagagtacgatctccctgtgatatggataactc |
309 |
Q |
| |
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||||| || || ||||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| || ||||||||||||||||| ||| | |
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| T |
27492344 |
gcaacgcatttcgaaacatgacagattctaagttcgaagggaagtttttatctgtcatataatcagcaagagtgcggtctccctgtgatatggacaaccc |
27492245 |
T |
|
| Q |
310 |
tccaattagt |
319 |
Q |
| |
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| |||||||| |
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| T |
27492244 |
tgcaattagt |
27492235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 27495236 - 27495080
Alignment:
| Q |
23 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
122 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27495236 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27495137 |
T |
|
| Q |
123 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
179 |
Q |
| |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
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|
| T |
27495136 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27495080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 27501894 - 27501738
Alignment:
| Q |
23 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
122 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27501894 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27501795 |
T |
|
| Q |
123 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
179 |
Q |
| |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
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|
| T |
27501794 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27501738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 27516686 - 27516530
Alignment:
| Q |
23 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
122 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27516686 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27516587 |
T |
|
| Q |
123 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
179 |
Q |
| |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
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|
| T |
27516586 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27516530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 27507711 - 27507565
Alignment:
| Q |
23 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
122 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||||||| | || |||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27507711 |
atcctaagatctgttgctgcaccaaaatcaacgaatttaatccgacctagttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27507612 |
T |
|
| Q |
123 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgc |
169 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
27507611 |
tgtcatgaattttcttaagagatgtaattatctggcgcattatttgc |
27507565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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