View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19431_high_15 (Length: 287)
Name: NF19431_high_15
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 5829387 - 5829161
Alignment:
| Q |
21 |
tcctctgaaatctcagaaataggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagtt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829387 |
tcctctgaaatctcagaaataggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagtt |
5829288 |
T |
|
| Q |
121 |
cgatagtagcacgacgaggattggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcatatataaca |
220 |
Q |
| |
|
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5829287 |
caattgtagcacgacgagggttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcgtatataaca |
5829188 |
T |
|
| Q |
221 |
aaac-aaaagtgttaaaaccatactat |
246 |
Q |
| |
|
|||| ||||| |||||||||||||||| |
|
|
| T |
5829187 |
aaacaaaaagagttaaaaccatactat |
5829161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 5822521 - 5822690
Alignment:
| Q |
40 |
taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgatagtagcacgacgagg |
139 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
5822521 |
taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg |
5822620 |
T |
|
| Q |
140 |
attggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttat |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
5822621 |
gttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttat |
5822690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 5831980 - 5832131
Alignment:
| Q |
41 |
aggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgatagtagcacgacgagga |
140 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||| || ||||| || |||| ||||||||| ||||| ||| |||| ||||||||||||| |
|
|
| T |
5831980 |
aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg |
5832079 |
T |
|
| Q |
141 |
ttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacat |
192 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
5832080 |
ttggtcttgtgtttctcacatagttctggcaaaaatactcctgttgtcacat |
5832131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University