View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_high_16 (Length: 268)
Name: NF19431_high_16
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_16 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 12135557 - 12135316
Alignment:
| Q |
20 |
taattcatgctggccaggtcnnnnnnnatttaattattgatccatttcatattaaattaaaagtaaaatatttatatcttaccataactacgtacataac |
119 |
Q |
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| T |
12135557 |
taattcatgctggccaggtctttttttatttaattattgatccaattcatattaaattaaaagtaaaatatttatatattaccataactacgtacataac |
12135458 |
T |
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| Q |
120 |
gacgaattttgaaataagtattttccggtttctaattcttctgtacaggcagaaataaatcctgctcctcttcaccgtgctgcaaaattgctcatcaatt |
219 |
Q |
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| T |
12135457 |
gacgaattttgaaataagtattttccggtttctaattcttctgtacaggcagaaataaatcctgctcctcttcaccgtgctgcaaaattgctcatcaatt |
12135358 |
T |
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| Q |
220 |
ctcagttggaagagggtgattggccacaacaggttcatctca |
261 |
Q |
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| T |
12135357 |
ctcagttggaagagggtgattggccacaacaggttcatctca |
12135316 |
T |
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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 13055014 - 13055123
Alignment:
| Q |
148 |
tttctaattcttctgtacaggcagaaataaatcctgctcctcttcaccgtgctgcaaaattgctcatcaattctcagttggaagagggtgattggccaca |
247 |
Q |
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| T |
13055014 |
tttccaattcttgtgtataggcagaaagagaccttactcctcttcatcgttctgcaaaatttctcatcaattcccagttgaaagagggtgattggcccca |
13055113 |
T |
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| Q |
248 |
acaggttcat |
257 |
Q |
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| T |
13055114 |
acaggttcat |
13055123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 166782 - 166857
Alignment:
| Q |
184 |
ctcctcttcaccgtgctgcaaaattgctcatcaattctcagttggaagagggtgattggccacaacaggttcatct |
259 |
Q |
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| T |
166782 |
ctcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggccccaacaggttcatct |
166857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 106248 - 106325
Alignment:
| Q |
184 |
ctcctcttcaccgtgctgcaaaattgctcatcaattctcagttggaagagggtgattggccacaacaggttcatctca |
261 |
Q |
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| T |
106248 |
ctcctctccatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcgattggccccaacaggtttatctca |
106325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 5652236 - 5652166
Alignment:
| Q |
187 |
ctcttcaccgtgctgcaaaattgctcatcaattctcagttggaagagggtgattggccacaacaggttcat |
257 |
Q |
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| T |
5652236 |
ctcttcatcgtgctgcaaaattaatcatcaattcccaattagaagagggtgactggccccaacaggttcat |
5652166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 5719064 - 5719032
Alignment:
| Q |
231 |
gagggtgattggccacaacaggttcatctcagt |
263 |
Q |
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| T |
5719064 |
gagggtgattggccccaacaggttcatctcagt |
5719032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 90291 - 90218
Alignment:
| Q |
184 |
ctcctcttcaccgtgctgcaaaattgctcatcaattctcagttggaagagggtgattggccacaacaggttcat |
257 |
Q |
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| T |
90291 |
ctcctctccatcgtgctgcaaaattgcttataaattctcagttgaaacaaggagattggccccaacaggttcat |
90218 |
T |
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