View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_high_18 (Length: 263)
Name: NF19431_high_18
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 34444895 - 34445135
Alignment:
| Q |
9 |
agcacagatgaagcattgacacggatgcccaacacaaacaccgacacgttaacataaataataatttaaaactataacataatttattataattatatgt |
108 |
Q |
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| T |
34444895 |
agcatagatgaagcattgacacggatgcccaacacgaacaccgacacgttgacatcaataataatttaaaaatataacataatttattataattatatgt |
34444994 |
T |
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| Q |
109 |
gtcagtgacgtgttagtgtgagacaccaacatgtgtttgtcactaaaacacgcctaatctaaataatgtgcgtgcatataatacagttttcagcagagct |
208 |
Q |
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| T |
34444995 |
gtcagtgacatgttagtgtgagacaccaacatgtgtttgtcactagaacacgcctaatctgaaaaatgtgcgtgcatataatacagttttcagcagagct |
34445094 |
T |
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| Q |
209 |
tttgtgtcagtagaaatgaaggattatgcatcatagattta |
249 |
Q |
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| T |
34445095 |
tttgtgtaagtagaaatgaaggattacgcaacatagattta |
34445135 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 28678311 - 28678380
Alignment:
| Q |
67 |
taataatttaaaactataacataatttattataattatatgtgtcagtgacgtgttagtgtgagacacca |
136 |
Q |
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| T |
28678311 |
taataatttaataaaatcacataatttagtataattgtatgtgtcggtgtcgtgttggtgtcagacacca |
28678380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 21885799 - 21885843
Alignment:
| Q |
66 |
ataataatttaaaactataacataatttattataattatatgtgt |
110 |
Q |
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| T |
21885799 |
ataataatttaaaaaaataacataatttaatctaattatatgtgt |
21885843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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