View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_high_20 (Length: 242)
Name: NF19431_high_20
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 2468189 - 2467969
Alignment:
| Q |
8 |
tttcgcttcaatcattgttgtggattctacaatcctggtcgtcacatcttcaaagcatgggcacctgccgcaaaacgaccttgtcttgaggaagaatttc |
107 |
Q |
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| T |
2468189 |
tttcgcctcaatcattgttgtggattctacaatcctggtcgtcacatcttcaaagcatgggcacctgccgcaaaacgaccttgtcttgaggaagaatttc |
2468090 |
T |
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| Q |
108 |
atcttcaagatcattcgcataattatcctaccttttatatcaatccttatnnnnnnntgatgcaggacttattaaagtggatattggtccaattggtgtt |
207 |
Q |
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| T |
2468089 |
atcttcaagatcattcgcataattatcctaccttttatatcaatccttataaaaaaatgatgcaggacttattaaagtggatattggtccaattggtgtt |
2467990 |
T |
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| Q |
208 |
ccatttaatgtgattaataat |
228 |
Q |
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||||||||||||||||||||| |
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| T |
2467989 |
ccatttaatgtgattaataat |
2467969 |
T |
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