View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_high_21 (Length: 238)
Name: NF19431_high_21
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 23335491 - 23335283
Alignment:
| Q |
12 |
aagaatatgtattccattggattcatatgcactttagttgcatctgcagggtatgggttgatcctttcccttacacaactagctttcaagaaggttgtga |
111 |
Q |
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| T |
23335491 |
aagaaaatgtattccattggattcatatgcactttagttgcatctgcagggtatgggttgatcctttcccttacacaactagctttcaagaaggttgtga |
23335392 |
T |
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| Q |
112 |
aaaggcaaaattttaaaagtgtgatggacatgataatatatcaacaaatggtagctacttgtattactctagtaggactttttgcaagtggagagtggaa |
211 |
Q |
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| T |
23335391 |
aaaggcaaaattttaaaagtgtgatggacatgataatatatcaacaaatggtagctacttgtattactctagtaggactttttgcaagtggagagtggaa |
23335292 |
T |
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| Q |
212 |
tggtataaa |
220 |
Q |
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||||||||| |
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| T |
23335291 |
tggtataaa |
23335283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 30825379 - 30825528
Alignment:
| Q |
62 |
gtatgggttgatcctttcccttacacaactagctttcaagaaggttgtgaaaaggcaaaattttaaaagtgtgatggacatgataatatatcaacaaatg |
161 |
Q |
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|||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||||| || |
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| T |
30825379 |
gtatggattggtgctttcccttacacaactagctttcaagaaggttgtgaaaagggaaaattttagaagtgtcatggatatgataatatatcaacaactg |
30825478 |
T |
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| Q |
162 |
gtagctacttgtattactctagtaggactttttgcaagtggagagtggaa |
211 |
Q |
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| T |
30825479 |
gtagctacttgtgtgactctaattggactttttgcaagtggagagtggaa |
30825528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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