View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_high_23 (Length: 220)
Name: NF19431_high_23
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 36964853 - 36964983
Alignment:
| Q |
71 |
agatagatagatcgaaagactttcctcaattgtaagaaactccatataggacttttcatttacactttcttcggtagccattgcagggaagacacatctt |
170 |
Q |
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| T |
36964853 |
agatagatagatcgaaagactttcctcaattgtaagaaactccatataggacttttcatttacactttcttcggtagccattgcagggaagacacatctt |
36964952 |
T |
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| Q |
171 |
ggaattggtcccgtcaattgattgtcagaaa |
201 |
Q |
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| T |
36964953 |
ggaattggtcccgtcaattgattgtcagaaa |
36964983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 36976603 - 36976691
Alignment:
| Q |
84 |
gaaagactttcctcaattgtaagaaactccatataggacttttcatttacactttcttcggtagccattgcagggaagacacatcttgg |
172 |
Q |
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| T |
36976603 |
gaaagactttccttaatcgtaagaaactccatatatgatttttcatttatactttcctcagtagccattgcagggaagacacatcttgg |
36976691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 5868479 - 5868357
Alignment:
| Q |
71 |
agatagatagatcgaaagactttcctcaattgtaagaaactccatataggacttttcatttacactttcttcggtagccattgcagggaagacacatctt |
170 |
Q |
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|||||||||||||| |||||||||||||||||| | |||||||||||| || |||||||||| ||||||||| |||| || |||| |||||||||||||| |
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| T |
5868479 |
agatagatagatcggaagactttcctcaattgtcataaactccatatatgatttttcatttatactttcttcagtagtcagtgcaaggaagacacatctt |
5868380 |
T |
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| Q |
171 |
ggaattggtcccgtcaattgatt |
193 |
Q |
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| T |
5868379 |
ggaattgcacccgtcaattgatt |
5868357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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