View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19431_high_5 (Length: 377)

Name: NF19431_high_5
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19431_high_5
NF19431_high_5
[»] chr6 (7 HSPs)
chr6 (146-359)||(12778728-12778941)
chr6 (10-65)||(12778987-12779042)
chr6 (282-357)||(22873501-22873576)
chr6 (275-357)||(34374108-34374190)
chr6 (275-331)||(18203119-18203175)
chr6 (294-357)||(22888956-22889019)
chr6 (294-357)||(22910499-22910562)
[»] chr5 (2 HSPs)
chr5 (146-206)||(18840378-18840438)
chr5 (275-357)||(18252102-18252184)
[»] chr7 (2 HSPs)
chr7 (275-359)||(11001145-11001229)
chr7 (282-336)||(8915514-8915568)
[»] chr2 (1 HSPs)
chr2 (269-357)||(32162288-32162375)
[»] chr4 (2 HSPs)
chr4 (294-357)||(22716315-22716378)
chr4 (294-357)||(22988839-22988902)
[»] scaffold0054 (1 HSPs)
scaffold0054 (294-357)||(10352-10415)
[»] chr8 (1 HSPs)
chr8 (282-357)||(24577851-24577926)
[»] chr1 (1 HSPs)
chr1 (282-338)||(23988914-23988970)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 146 - 359
Target Start/End: Complemental strand, 12778941 - 12778728
Alignment:
Q  146 tgtcacttcaatgccttcatcagatatatagagacagttccaaaacacaattgattgaacactatcta--attcaacaaactaatcgaggttgaatacag 243  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  12778941 tgtcacttcaatgcttccatcagatatatagagacagctccaaaacacaattgattgaacactatctataattcaacaaactaatccaggttgaatacag 12778842  T
Q  244 agcttggaaacaaaaaacaatgtcctctcacttcacttaatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctc 343  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |||||||| ||||||||| |||  | |||    
T  12778841 agcttagaaacaaaaaacaatgtcctctcatttcacttaatgggatccaagagggttgtctcttgttcattggaggagtcaacatgcaaagga--aactc 12778744  T
Q  344 tatcataatgagaatt 359  Q
    ||||| ||||||||||    
T  12778743 tatcagaatgagaatt 12778728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 12779042 - 12778987
Alignment:
Q  10 agataatactttcactagtacaatttaaagtcttggtatcaagtttcacatagcta 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12779042 agataatactttcactagtacaatttaaagtcttggtatcaagtttcgcatagcta 12778987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 22873501 - 22873576
Alignment:
Q  282 aatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    ||||||||| | |||||| ||||||||||||| |||||||| || ||||| |||||| ||| ||||||||||||||    
T  22873501 aatgggatccaggagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaa 22873576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 34374190 - 34374108
Alignment:
Q  275 ttcacttaatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    |||||| ||||||||| ||||| |||||||||||||||| ||| |||| |||||||| |||||  ||| ||||| ||||||||    
T  34374190 ttcactcaatgggatccaagagagtggtctcttgttcattggaagagtcaacatgcatgggaatctctttatcaaaatgagaa 34374108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 18203119 - 18203175
Alignment:
Q  275 ttcacttaatgggatctaagagggtggtctcttgttcatcggaggagttaacatgca 331  Q
    |||||| ||||||||||| ||||||||||||||||||||  ||||||| ||||||||    
T  18203119 ttcactgaatgggatctaggagggtggtctcttgttcattcgaggagtcaacatgca 18203175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 22888956 - 22889019
Alignment:
Q  294 gagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    |||||| ||||||||||||| |||||||| || ||||| |||||| ||| ||||||||||||||    
T  22888956 gagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaa 22889019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 22910499 - 22910562
Alignment:
Q  294 gagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    |||||| ||||||||||||| |||||||| || || || |||||| ||| ||||||||||||||    
T  22910499 gagggttgtctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaa 22910562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 18840378 - 18840438
Alignment:
Q  146 tgtcacttcaatgccttcatcagatatatagagacagttccaaaacacaattgattgaaca 206  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  18840378 tgtcacttcaatgctttcatcagatacatagagaaagttccaaaacacaattgattgaaca 18840438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 18252102 - 18252184
Alignment:
Q  275 ttcacttaatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    |||||| ||||||||  | |||||||||||||||| ||| ||||||||  ||||||| || ||| | | ||||||||||||||    
T  18252102 ttcactaaatgggattcaggagggtggtctcttgtccattggaggagtccacatgcatggaaagctgtttatcataatgagaa 18252184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 11001229 - 11001145
Alignment:
Q  275 ttcacttaatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaatt 359  Q
    |||||| ||||||||| | |||| || |||||| ||||| ||||||||||||||||| |||||| ||| ||||| ||||||||||    
T  11001229 ttcactcaatgggatccaggaggatgatctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatt 11001145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 8915568 - 8915514
Alignment:
Q  282 aatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaaggga 336  Q
    ||||| |||||  ||| |||||||||||||||||||||||| |||||||| ||||    
T  8915568 aatggcatctagaaggttggtctcttgttcatcggaggagtcaacatgcatggga 8915514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 32162375 - 32162288
Alignment:
Q  269 tctcacttcacttaatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    ||||| |||||| ||||||||| | ||||||||||||||||||||  || |||| |||||||| |||||| ||| ||||| ||||||||    
T  32162375 tctcatttcactcaatgggatcaaggagggtggtctcttgttcattaga-gagtcaacatgcatgggaagctctttatcagaatgagaa 32162288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 22716315 - 22716378
Alignment:
Q  294 gagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    |||||||||||||||||||| |||||||| |||||| | |||||| ||| ||||| ||||||||    
T  22716315 gagggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaa 22716378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 22988902 - 22988839
Alignment:
Q  294 gagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    |||||||||||||||||||| |||||||| |||||| | |||||| ||| ||||| ||||||||    
T  22988902 gagggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaa 22988839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 10352 - 10415
Alignment:
Q  294 gagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    |||||| ||||||||||||| |||||||| || || || |||||| ||| ||||||||||||||    
T  10352 gagggttgtctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaa 10415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 24577926 - 24577851
Alignment:
Q  282 aatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaagggaagatctctatcataatgagaa 357  Q
    ||||||||||| |||| |||||||||||| || |||||||| || ||||||| |||| ||| ||||| || |||||    
T  24577926 aatgggatctaggaggatggtctcttgtttattggaggagtaaatatgcaagcgaagttctgtatcagaaggagaa 24577851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 23988914 - 23988970
Alignment:
Q  282 aatgggatctaagagggtggtctcttgttcatcggaggagttaacatgcaagggaag 338  Q
    ||||||||| |  |||||| ||||||| |||| | ||||||||||||||||||||||    
T  23988914 aatgggatccagaagggtgatctcttgctcattgaaggagttaacatgcaagggaag 23988970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University