View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_high_6 (Length: 343)
Name: NF19431_high_6
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 42639056 - 42639366
Alignment:
| Q |
20 |
gtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggttgatg |
119 |
Q |
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| T |
42639056 |
gtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggttgatg |
42639155 |
T |
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| Q |
120 |
acaccgtgcacattattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccat |
219 |
Q |
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| T |
42639156 |
acaccgtgcacgttattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccat |
42639255 |
T |
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| Q |
220 |
tgtctcttccagctggtccatagttgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgcc |
319 |
Q |
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| T |
42639256 |
tgtctcttccagctggtccatagttgtagttccaagatagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgcc |
42639355 |
T |
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| Q |
320 |
ttcatctcagt |
330 |
Q |
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|||||| |||| |
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| T |
42639356 |
ttcatcacagt |
42639366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 42633976 - 42634289
Alignment:
| Q |
20 |
gtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttg---gttg |
116 |
Q |
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| T |
42633976 |
gtagtaatcaacacgagccttaactgtgttggggtcaacaccgtcacattcaagtcgaccattaatggctctaaccgttgcaccaaagccttgttggttc |
42634075 |
T |
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| Q |
117 |
atgacaccgtgcacattattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaac |
216 |
Q |
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| T |
42634076 |
atgacattgtgcacatgattcatccaataccataatgctgtcttgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaac |
42634175 |
T |
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| Q |
217 |
cattgtctcttccagctggtccatagttgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgtt |
316 |
Q |
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| T |
42634176 |
cactgtcctttccagctggtccgtaattaaagttccaagataattgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgtt |
42634275 |
T |
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| Q |
317 |
gccttcatctcagt |
330 |
Q |
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| T |
42634276 |
gctttcatcgcagt |
42634289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 42628457 - 42628551
Alignment:
| Q |
20 |
gtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggt |
114 |
Q |
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|||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
42628457 |
gtagcaaccaacacgagtctgaactgtagttggcttagcaccatcacattcaagtcgaccattaatggctctagtggttgcaccaaagccttggt |
42628551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
173 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
223 |
Q |
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| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 42628651 - 42628694
Alignment:
| Q |
260 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatg |
303 |
Q |
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| T |
42628651 |
ttgaatcggtccacaaccatagaaccctttgttaggggcacatg |
42628694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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