View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19431_high_8 (Length: 331)
Name: NF19431_high_8
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 41117300 - 41117049
Alignment:
| Q |
20 |
caatgaacttgaagtagaaatcaagaacttaatcaaggtatggctcaaagtcctagcttcactatcttactgttatttcatatcctcaaacattccaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41117300 |
caatgaacttgaagtagaaatcaagaacttaatcaaggtatggctcaaagtcctagcttcactatcttactgttatttcatatcctcaaacattccaaaa |
41117201 |
T |
|
| Q |
120 |
ggcatattaaggtttctgtccttgtctccaattttttacctcttcaccatcctaccatttcaactctctttagttctcccaataggtatcacttccttct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41117200 |
ggcatattaaggtttctgtccttgtctccaattttttacctcttcaccatcctaccatttcaactctctttagttctcccaataggtatcacttccttct |
41117101 |
T |
|
| Q |
220 |
tcattacttggctcacaaacttcaaacttctccttttcacctttgatttggg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41117100 |
tcattacttggctcacaaacttcaaacttctccttttcacctttgatttggg |
41117049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University