View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_high_9 (Length: 326)
Name: NF19431_high_9
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 31819968 - 31820276
Alignment:
| Q |
1 |
attaagcatttcaggaatgggccaattctctttaactactatgataatactaattagcatataaagaagtggggaaatgctagagtctgcccctgtctaa |
100 |
Q |
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| T |
31819968 |
attaggcatttcaggaatgggccaattctctttaactactatgataatactaattagcatataaagaagtggggaaatgctagagtctgcccctgtctaa |
31820067 |
T |
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| Q |
101 |
ttctgatatgcattgttctcggtcaattacaaatgtgcattatcaaatgtttattggaaaataatgtcttgcaaatgattcctaaaactgcttagaggac |
200 |
Q |
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| T |
31820068 |
ttctgatatgcattgttctcggtcaattacaaatgtgcattatcaaatgtttattggaaaataatgtcttgcaaatgattcctaaaactgcttagaggac |
31820167 |
T |
|
| Q |
201 |
aggnnnnnnncaagtgcatagtattttaaagaacatggacaccaacttaattaagcaagcaagcacaaaagagaggaatctttatgattgatcaaatata |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820168 |
aggaaaaaaacaagtgcatagtattttaaagaacatggacaccaacttaattaagcaagcaagcacaaaagagaggaatctttatgattgatcaaatata |
31820267 |
T |
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| Q |
301 |
ggcaataat |
309 |
Q |
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||||||||| |
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| T |
31820268 |
ggcaataat |
31820276 |
T |
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