View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19431_low_11 (Length: 324)
Name: NF19431_low_11
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_low_11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 12135339 - 12135015
Alignment:
| Q |
1 |
attggccacaacaggttcatctcaatcatttgataatgcatatttatgtctagctcacaatagcaaagattgattatagtggtaattatgatattggaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12135339 |
attggccacaacaggttcatctcaatcatttgataatgcatatttatgtctagctcacaatagcaaagattgattatagtgataattatgatattggaaa |
12135240 |
T |
|
| Q |
101 |
ataggacacgagataatagcattataaatcaaaaaccaaattgtgtcactccatcttcaatgtgttaggacacttttctatagtttcaatttgatgttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12135239 |
ataggacacgagataatagcattataaatcaaaaaccaaattgtgtcactccatcttcaatgtgttaggacacttttctatagtttcaatttgatgttca |
12135140 |
T |
|
| Q |
201 |
aaatggagttcgattgcatgattacaatgaaaaacatatttttcccagtagatgaacttggctccacatctcatggtagagtttctatttctaaatata- |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12135139 |
aaatggagttcgattgcatgattacaatgaaaatcatatttttcccagtagatgaacttggctccacatctcatggtagagtttctttttctaaatatat |
12135040 |
T |
|
| Q |
300 |
tttgtgtatatttgatgcaggaaat |
324 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
12135039 |
tttttgtatatttgatgcaggaaat |
12135015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University