View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_low_12 (Length: 319)
Name: NF19431_low_12
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 41116979 - 41116828
Alignment:
| Q |
1 |
cacacaaaaacaaaaacacccatcaaaattcaatattttgctaccaatcaaagccttgcttttttgtcttttccttataagcctaaatgaccaaaaacaa |
100 |
Q |
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| T |
41116979 |
cacacaaaaacaaaaacacccatcaaaattcaatattttgctaccaatcaaagccttgtttttttgtcttttccttataagcctaaatgaccaaaaacaa |
41116880 |
T |
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| Q |
101 |
aagcaaaagatgcacccatcaattattattatgggtctctattgtagcctca |
152 |
Q |
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| T |
41116879 |
aagcaaaagatgcacccatcaattattattatgggtctctattgtagcctca |
41116828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 41116761 - 41116665
Alignment:
| Q |
219 |
agcttgaattaccttctaatgagccttatttgtcatcttcattgggtgatttttgggggaaaagatggaacctcatggtaacatattttcttcgaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
41116761 |
agcttgaattaccttctaatgagccttatttgtcatcttcattgggtgatttttgggggaaaagatggaacctcatggtaacatatattctgcgaca |
41116665 |
T |
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