View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_low_13 (Length: 316)
Name: NF19431_low_13
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 21663583 - 21663806
Alignment:
| Q |
18 |
agtatgtgcagaaggcatgggaggcttttggacatattgatgcgttgatcaataatgctggtgttagaggtaatttgaatttaaattaacgttttgttct |
117 |
Q |
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| T |
21663583 |
agtatgtgcagaaggcatgggaggcttttggacatattgatgcgttgatcaataatgctggtgttagaggtaatttgaatttaaattaatgttttgctct |
21663682 |
T |
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| Q |
118 |
atcaaacacccacacttttgggattagacgtgtctgacatcgatatgataccaacacatataattaaactgcattatttattatttttaaattattaata |
217 |
Q |
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| T |
21663683 |
atcaagcatccacacttttgagattaggcatgtctgacaccaatatgataccgacacatataattatactgcattatttattatttttaaattattaata |
21663782 |
T |
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| Q |
218 |
gtatcggcgtgtcaacgtccgtat |
241 |
Q |
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|||| |||||||||||||||||| |
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| T |
21663783 |
atatcagcgtgtcaacgtccgtat |
21663806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 21672347 - 21672570
Alignment:
| Q |
18 |
agtatgtgcagaaggcatgggaggcttttggacatattgatgcgttgatcaataatgctggtgttagaggtaatttgaatttaaattaacgttttgttct |
117 |
Q |
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| T |
21672347 |
agtatgtgcagaaggcatgggaggcttttggacatattgatgcgttgatcaataatgctggtgttagaggtaatttgaatttaaattaatgttttgctct |
21672446 |
T |
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| Q |
118 |
atcaaacacccacacttttgggattagacgtgtctgacatcgatatgataccaacacatataattaaactgcattatttattatttttaaattattaata |
217 |
Q |
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| T |
21672447 |
atcaagcatccacacttttgagattaggcatgtctgacaccaatatgataccgacacatataattatactgcattatttattatttttaaattattaata |
21672546 |
T |
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| Q |
218 |
gtatcggcgtgtcaacgtccgtat |
241 |
Q |
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|||| |||||||||||||||||| |
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| T |
21672547 |
atatcagcgtgtcaacgtccgtat |
21672570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 21658669 - 21658764
Alignment:
| Q |
18 |
agtatgtgcagaaggcatgggaggcttttggacatattgatgcgttgatcaataatgctggtgttagaggtaatttgaatttaaattaacgttttg |
113 |
Q |
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| T |
21658669 |
agtatgtgcagaaggcatgggaggcttttggacatattgatgcgttgatcaataatgctggtgttagaggtaatttgagtttaaattaacgttttg |
21658764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 21663838 - 21663871
Alignment:
| Q |
273 |
gttagtatctgttcttcataagttttgatgatgt |
306 |
Q |
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| T |
21663838 |
gttagtatctgttcttcataagttttggtgatgt |
21663871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 21672602 - 21672635
Alignment:
| Q |
273 |
gttagtatctgttcttcataagttttgatgatgt |
306 |
Q |
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| T |
21672602 |
gttagtatctgttcttcataagttttggtgatgt |
21672635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 19977151 - 19977215
Alignment:
| Q |
23 |
gtgcagaaggcatgggaggcttttggacatattgatgcgttgatcaataatgctggtgttagagg |
87 |
Q |
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| T |
19977151 |
gtgcataaggcgtgggatgcctttgggcatattgatacattgattaacaatgctggtgttagagg |
19977215 |
T |
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