View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_low_2 (Length: 459)
Name: NF19431_low_2
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 42959926 - 42960365
Alignment:
| Q |
1 |
tgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959926 |
tgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgat |
42960025 |
T |
|
| Q |
101 |
aaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggt |
200 |
Q |
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| T |
42960026 |
aaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggt |
42960125 |
T |
|
| Q |
201 |
ataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactggacaactt |
300 |
Q |
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| T |
42960126 |
ataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactggacaactt |
42960225 |
T |
|
| Q |
301 |
ttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgat |
400 |
Q |
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| T |
42960226 |
ttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgat |
42960325 |
T |
|
| Q |
401 |
caatttgagatcacctgttgaccatggattagcaactttt |
440 |
Q |
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| T |
42960326 |
caatttgagatcacctgttgaccatggattagcaactttt |
42960365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 416
Target Start/End: Complemental strand, 5504807 - 5504394
Alignment:
| Q |
3 |
acagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgataa |
102 |
Q |
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| T |
5504807 |
acagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgtcaacgtcaagaaccttataatcagggctaacta |
5504708 |
T |
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| Q |
103 |
ccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggtat |
202 |
Q |
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| T |
5504707 |
cctttcccacatgacatccaccatggtaatgccaaattgtgatgacagtgtctttgcagaactgctctagggaagatgtgtcattggcatgttttggtat |
5504608 |
T |
|
| Q |
203 |
aaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactggacaactttt |
302 |
Q |
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| T |
5504607 |
gaagttgacagtagtcttcacactaaggttaagaagtctctctgcggtttctcttttacataatgtgtagtttgtgaagtgttctgactggactacttta |
5504508 |
T |
|
| Q |
303 |
gttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgatca |
402 |
Q |
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| || | | ||| |||||||| ||||| | | |||||| || ||||||||||||||||||||||||||||| || |||| |||||| ||||||| || |
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| T |
5504507 |
atggccatgctgatcccttcgacgcagcgctttaaatcgtatggatgactgaagtagttgaaggtaacagcaggattttcattcacattggtgttgacca |
5504408 |
T |
|
| Q |
403 |
atttgagatcacct |
416 |
Q |
| |
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| ||||| |||||| |
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|
| T |
5504407 |
acttgagctcacct |
5504394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 3094314 - 3094265
Alignment:
| Q |
120 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
169 |
Q |
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| T |
3094314 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
3094265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 3085468 - 3085419
Alignment:
| Q |
120 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
169 |
Q |
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| T |
3085468 |
ccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttc |
3085419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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