View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_low_23 (Length: 235)
Name: NF19431_low_23
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 42959926 - 42959709
Alignment:
| Q |
16 |
atgatgatgggcaggtatgtatagggcttactgataactc------------agtttaacgaaataagctgaaaacaatttataaacatgttataatata |
103 |
Q |
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| T |
42959926 |
atgatgatgggcaggtatgtatagggcttactgataactccgtttcatgaacagtttaacgaaataagctgaaaacagtttataaacatgttataatata |
42959827 |
T |
|
| Q |
104 |
ttttgataagccctttcaaacacatatatgtaagtgtttatgtcattagttaagaatataaataaataataatgcttacttttaacgtcctaataatata |
203 |
Q |
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| T |
42959826 |
ttttgataagccctttcaaacacatatatgtaagtgtttatgtcattagttaagaatataaataaataataatgcttacttttaacgtcctaataatata |
42959727 |
T |
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| Q |
204 |
tttatgtttgtcacaggt |
221 |
Q |
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| T |
42959726 |
tttatgtttgtcacaggt |
42959709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 11707094 - 11707142
Alignment:
| Q |
65 |
aaataagctgaaaacaatttataaacatgttataatatattttgataag |
113 |
Q |
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| T |
11707094 |
aaataagctgaaaacaacttataaacatgtcataatctattttgataag |
11707142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 35064893 - 35064923
Alignment:
| Q |
64 |
gaaataagctgaaaacaatttataaacatgt |
94 |
Q |
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| T |
35064893 |
gaaataagctgaaaacaatttataaacatgt |
35064923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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