View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19431_low_8 (Length: 341)
Name: NF19431_low_8
Description: NF19431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19431_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 2 - 336
Target Start/End: Complemental strand, 31819872 - 31819538
Alignment:
| Q |
2 |
tgcagtgacacatattttggttgtcttattaaaatccaactttatttcnnnnnnngatattttagattttaagaaaattattcgatgcatatttagattt |
101 |
Q |
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| T |
31819872 |
tgcagtcacacatattttggttgtcttattaaaatccaacttgatttcttttttcgatattttagattttaagaaaattattcgatgcatatttagattt |
31819773 |
T |
|
| Q |
102 |
acggtgagtttgatagagttatactgagtcatcatgaattatgatttacatagattacattatgaagtttcaacgaaaccatgatatatacattgtaatt |
201 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31819772 |
acggtgagtttgatagagttatagtgagtcatcatgaattatgatttacatagattacatcatgaagtttcaacgaaaccatgatatatacattgtaatt |
31819673 |
T |
|
| Q |
202 |
ttagcaaacccgctataaccctaattctaagcatgcactaaaaagtatatatactaggatgtttaacagcatgtatgattcttaataagcattttctttt |
301 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31819672 |
ttagcaaacccgctataaccctaattttaagcatgcactaaaaagtatatatactaggatgtttaacagcatgtatgattcttaataagcattttctttt |
31819573 |
T |
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| Q |
302 |
agacatattagagtttaagaagagttcatctcact |
336 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31819572 |
agacatattagagtttaagaagagttcatctcact |
31819538 |
T |
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