View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19432_high_3 (Length: 418)

Name: NF19432_high_3
Description: NF19432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19432_high_3
NF19432_high_3
[»] chr1 (1 HSPs)
chr1 (10-401)||(22512746-22513137)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 22512746 - 22513137
Alignment:
Q  10 aagaatattgaagtggaaattggtggcctcaaacaaatcaataatgcttggcttttttatttgggcggcattgatttaatgttgggaataacgtggttga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22512746 aagaatattgaagtggaaattggtggcctcaaacaaatcaataatgcttggcttttttatttgggcggcattgatttaatgttgggaatagcgtggttga 22512845  T
Q  110 cgaagattgaaggaatgtgggttgactgggtacagcagcttatgcgtttcaagctaaatggagaatgggtagagctgaagggccaaggtgatgatgtaag 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512846 cgaagattggaggaatgtgggttgactgggtacagcagcttatgcgtttcaagctaaatggagaatgggtagagctgaagggccaaggtgatgatgtaag 22512945  T
Q  210 tcgacagggggctctgcagaatttgttgtcacggcctaggcaggagatagtggggctgtttgtgacaattgggggtacaattgttgcaaaccccaaagtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512946 tcgacagggggctctgcagaatttgttgtcacggcctaggcaggagatagtggggctgtttgtgacaattgggggtacaattgttgcaaaccccaaagtt 22513045  T
Q  310 atcattgattcaacagcaggaggtgcaagagcgtttggctaattttgctgaaattttccaacaaccacaaggtatgccaccgaagcgaaaac 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22513046 atcattgattcaacagcaggaggtgcaagagcgtttggctaattttgctgaaattttccaacaaccacaaggtatgccaccgaagcgaaaac 22513137  T

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