View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19432_high_4 (Length: 340)
Name: NF19432_high_4
Description: NF19432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19432_high_4 |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 27455824 - 27455509
Alignment:
| Q |
12 |
atgaagattttggtggcataatttgatgttgaaaatatgttcatctcttgaaacatggtgatatgttcgtggttaataatgctacggtcaactccccctg |
111 |
Q |
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| T |
27455824 |
atgaagattttggtggcataatttgctgtggaaaatatgttcatctcttgaaacatggtgatatgtttttggtcaataatgctacggtcaactccccctg |
27455725 |
T |
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| Q |
112 |
cgattgaatggaaaaaagccaccagatcacgattgctcttttttgaattgtctactataaccttactgtctttgagcagttgaacatcactggaacagca |
211 |
Q |
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| T |
27455724 |
cgattgaatggaaaaaagccaccagatcacgattgctcttttttgaattgtctactataaccttactgtctttgagcagttgaacatcactggaacagca |
27455625 |
T |
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| Q |
212 |
taccaaatccctgaaaagcaaggcagatgaagtgcagaca---ctacgcctgtcagcaagaaaagaagaaccagtcttcaatttcttcttatgatgctcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
27455624 |
taccaaatccctgaaaagcaaggcagatgaagtgcagacactactacgcctgtcagcaggagaagaagaaccagtcttcaatttcttcttatgatgctcc |
27455525 |
T |
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| Q |
309 |
caagcaatgaaacttc |
324 |
Q |
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|||||||||||||||| |
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| T |
27455524 |
caagcaatgaaacttc |
27455509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 27425867 - 27425557
Alignment:
| Q |
12 |
atgaagattttggtggcataatttgatgttgaaaatatgttcatctcttgaaacatggtgatatgttcgtggttaataatgctacggtcaactccccctg |
111 |
Q |
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|||||||||||||||||||||||| || ||||||||||||| | ||||||||||||||||||| ||||| |||||||| ||||||||||||||| | |
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| T |
27425867 |
atgaagattttggtggcataattttctggggaaaatatgttcaaggcatgaaacatggtgatatgttggtggtcaataatgccacggtcaactcccccag |
27425768 |
T |
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| Q |
112 |
cgattgaatggaaaaaagccaccagatcacgattgctcttttttgaattgtctactataaccttactgtctttgagcagttgaacatcactggaacagca |
211 |
Q |
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|||||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
27425767 |
cgattgaatggaaaaaagccaccagatctcaattgctcttgttcgaattgtctactataactttactgtctttgagtagttgaacatcactggaacagca |
27425668 |
T |
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| Q |
212 |
taccaaatccctgaaaagcaaggcagatgaagtgcagacactacgcctgtcagcaagaaaagaagaaccagtcttcaatttcttcttatgatgctcccaa |
311 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27425667 |
taccaaatccctgaaaagcaaggcagatgaagctcacacactacgcctttctgcaacagaagaagaaccagtcttcaatttcttcttatgatgctcccaa |
27425568 |
T |
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| Q |
312 |
gcaatgaaact |
322 |
Q |
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| T |
27425567 |
gcaatgaaact |
27425557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 12 - 322
Target Start/End: Original strand, 2461 - 2774
Alignment:
| Q |
12 |
atgaagattttggtggcataatttgatgttgaaaatatgttcatctcttgaaacatggtgatatgttcgtggttaataatgctacggtcaactccccctg |
111 |
Q |
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||||||||||||||||| ||||||| || |||| |||||| | |||||||||||| |||||| ||||| |||||||||||||||||| ||||||| |
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| T |
2461 |
atgaagattttggtggcgtaatttgttgagtgaaatgtgttcaaggcatgaaacatggtggtatgtttgtggtcaataatgctacggtcaacaccccctg |
2560 |
T |
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| Q |
112 |
cgattgaatggaaaaaagccaccagatcacgattgctcttttttgaattgtctac---tataaccttactgtctttgagcagttgaacatcactggaaca |
208 |
Q |
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|||||||||||||||||| ||| ||||| |||| || || | ||| |||||| ||||| || |||||||| || ||||||||||| ||||| |
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| T |
2561 |
cgattgaatggaaaaaagtcactagatcttgatttcttttgtaggaacggtctactattataattcccctatctttgagtagctgaacatcacttgaaca |
2660 |
T |
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| Q |
209 |
gcataccaaatccctgaaaagcaaggcagatgaagtgcagacactacgcctgtcagcaagaaaagaagaaccagtcttcaatttcttcttatgatgctcc |
308 |
Q |
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||||| |||||| |||||||| |||||||| |||||||| | |||||||||||| |||| | || || || |||||||||||||||||||||||||| |
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| T |
2661 |
gcatatcaaatctctgaaaagaaaggcagaggaagtgcaaatactacgcctgtcggcaacagaacaactacttctcttcaatttcttcttatgatgctcc |
2760 |
T |
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| Q |
309 |
caagcaatgaaact |
322 |
Q |
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||||| |||||||| |
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| T |
2761 |
caagctatgaaact |
2774 |
T |
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