View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19432_high_5 (Length: 334)
Name: NF19432_high_5
Description: NF19432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19432_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 38636442 - 38636640
Alignment:
| Q |
1 |
tatcataaacaaacaatcactgaaagattcaaactatagaaaacaataaaggttgtaacacatttaaactgtgaacagataatcacagaaagattcaaat |
100 |
Q |
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| T |
38636442 |
tatcataaacaaacaatcactgaaagattcaaactttagaaaacaataaaggt---aacacatttaaactgtgaacagataatcacagaaagattcaaat |
38636538 |
T |
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| Q |
101 |
tttagtaaataaaaaatcaacatgttcaagagaattaatcaatcacataaaccctgataaccaaaagtactaaatcacccttaatcttcaatttttcaga |
200 |
Q |
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| T |
38636539 |
tttagtaaataaaaaatcaacatgttcaagagaattaatcaatcacataaaccctgataagcaaaagtactaaatcacccttaatcttcaatttttcaga |
38636638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 38636678 - 38636736
Alignment:
| Q |
257 |
ctctgggttggttttgttcggttggagcaatgacagctctagaagccatagcagaaata |
315 |
Q |
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| T |
38636678 |
ctctgggttggttttgttcggttggagcaatgacagctctagaagccatagcagaaata |
38636736 |
T |
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