View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19432_low_3 (Length: 418)
Name: NF19432_low_3
Description: NF19432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19432_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 22512746 - 22513137
Alignment:
| Q |
10 |
aagaatattgaagtggaaattggtggcctcaaacaaatcaataatgcttggcttttttatttgggcggcattgatttaatgttgggaataacgtggttga |
109 |
Q |
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| T |
22512746 |
aagaatattgaagtggaaattggtggcctcaaacaaatcaataatgcttggcttttttatttgggcggcattgatttaatgttgggaatagcgtggttga |
22512845 |
T |
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| Q |
110 |
cgaagattgaaggaatgtgggttgactgggtacagcagcttatgcgtttcaagctaaatggagaatgggtagagctgaagggccaaggtgatgatgtaag |
209 |
Q |
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| T |
22512846 |
cgaagattggaggaatgtgggttgactgggtacagcagcttatgcgtttcaagctaaatggagaatgggtagagctgaagggccaaggtgatgatgtaag |
22512945 |
T |
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| Q |
210 |
tcgacagggggctctgcagaatttgttgtcacggcctaggcaggagatagtggggctgtttgtgacaattgggggtacaattgttgcaaaccccaaagtt |
309 |
Q |
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| T |
22512946 |
tcgacagggggctctgcagaatttgttgtcacggcctaggcaggagatagtggggctgtttgtgacaattgggggtacaattgttgcaaaccccaaagtt |
22513045 |
T |
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| Q |
310 |
atcattgattcaacagcaggaggtgcaagagcgtttggctaattttgctgaaattttccaacaaccacaaggtatgccaccgaagcgaaaac |
401 |
Q |
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| T |
22513046 |
atcattgattcaacagcaggaggtgcaagagcgtttggctaattttgctgaaattttccaacaaccacaaggtatgccaccgaagcgaaaac |
22513137 |
T |
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