View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19432_low_6 (Length: 312)
Name: NF19432_low_6
Description: NF19432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19432_low_6 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 9330 - 9052
Alignment:
| Q |
17 |
cgagtgaaggagtgatgctagagcatatgagcaaaggagctaattctttctcaagaccgcttactcagaaacgtgggtcgttatagattcaaagcttagt |
116 |
Q |
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| T |
9330 |
cgagtgaaggagtgatgctagagcatatgagcaaaggagctaattctttctcaagaccgcttactcagaaacgtgggtcgctatagactcaaagcttagt |
9231 |
T |
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| Q |
117 |
caaagacaaagtgggactggacaatgacgcattacccacgattgctgatctcaacccccataaccgctccaaggcatgagggacatggcacgaccagtag |
216 |
Q |
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| T |
9230 |
caaagacaaagtgggactggacaatgacgcattacccacgattgctgatctcaacccccataaccgctccaaggcatgagggacatggcacgaccagtag |
9131 |
T |
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| Q |
217 |
tagagatgcgtgaaaaaagatagtatcaacagatcatgctgaggagaggacattgaagccgaacatggggcgccacgat |
295 |
Q |
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| T |
9130 |
tagagatgcgtgaaaaaagatagtatcaacagatcatgctgaggagaggagattgaagccgaacatagggcgccacgat |
9052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 14620 - 14342
Alignment:
| Q |
17 |
cgagtgaaggagtgatgctagagcatatgagcaaaggagctaattctttctcaagaccgcttactcagaaacgtgggtcgttatagattcaaagcttagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
14620 |
cgagtgaaggagtgatgctagagcatatgagcaaaggagctaattctttctcaagaccgcttactcagaaacgtgggtcgctatagactcaaagcttagt |
14521 |
T |
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| Q |
117 |
caaagacaaagtgggactggacaatgacgcattacccacgattgctgatctcaacccccataaccgctccaaggcatgagggacatggcacgaccagtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14520 |
caaagacaaagtgggactggacaatgacgcattacccacgattgctgatctcaacccccataaccgctccaaggcatgagggacatggcacgaccagtag |
14421 |
T |
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| Q |
217 |
tagagatgcgtgaaaaaagatagtatcaacagatcatgctgaggagaggacattgaagccgaacatggggcgccacgat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
14420 |
tagagatgcgtgaaaaaagatagtatcaacagatcatgctgaggagaggagattgaagccgaacatagggcgccacgat |
14342 |
T |
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