View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19432_low_7 (Length: 311)
Name: NF19432_low_7
Description: NF19432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19432_low_7 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 38151415 - 38151699
Alignment:
| Q |
9 |
gaagaatattggagaatgtgttgaagtaatgtgtggttgtactagtcatagatatggtgatgctgttggaaggcttagggtttttgttaatgggtatctt |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38151415 |
gaagaaaattggagaatgtgttgaagtaatgtgtggttgtactagtcatagatatggtgatgctgttggaaggcttagggtttttgttaatgggtatctt |
38151514 |
T |
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| Q |
109 |
gaaatcacttgtgaatgcatccctggttgtgaagaaggtcattttctatctcttatctttgtaataccaacacttatgattaaagacgtctttggtgtcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38151515 |
gaaatcacttgtgaatgcatccctggttgtgaagaaggtcattttctatctcttatctctgtaacaccaacacttatgattaaagacgtctttggtgtcc |
38151614 |
T |
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| Q |
209 |
gacactaacactacactaatcattttcttaaattactaccatgagtatgagtgtcgtgttcgatgtatatgtcggcgttttacat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38151615 |
gacactaacactacactaatcattttcttaaattactaccatgagtatgagtgtcgtgtttgatgtatatgtcggcgttttacat |
38151699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 22103 - 22229
Alignment:
| Q |
22 |
gaatgtgttgaagtaatgtgtggttgtactagtcatagatatggtgatgctgttggaaggcttagggtttttgttaatgggtatcttgaaatcacttgtg |
121 |
Q |
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|||| ||||||||| | |||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| || ||| |||| | ||||| |
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| T |
22103 |
gaatatgttgaagtcacgtgtgggtgtactagtcatagatatggtgatgctgttggtagacttagggtttttcttagtggctaccttcaaattatttgtg |
22202 |
T |
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| Q |
122 |
aatgcatccctggttgtgaagaaggtc |
148 |
Q |
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| T |
22203 |
aatgcactcctggttgtgatgaaggtc |
22229 |
T |
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