View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19433_high_2 (Length: 497)
Name: NF19433_high_2
Description: NF19433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19433_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 28 - 480
Target Start/End: Complemental strand, 55940051 - 55939598
Alignment:
| Q |
28 |
ttcgaatttcatttagccacatccagcaatatatatcttctcattctttaggtattttcctgacttaccaatcaagttttaccacatgtaccatatccat |
127 |
Q |
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| T |
55940051 |
ttcgaatttcatttagccacatccagcaatatatatcttctcattctttaggtattttcctgacttactaatcaagttttaccacatgtaccatatccat |
55939952 |
T |
|
| Q |
128 |
tatcatccagttctatgttaagattgctagcactttccaataaaagtagtgctagcaaaacaatctcttttcaacttgattgataaacttcgtctagaac |
227 |
Q |
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| T |
55939951 |
tatcatccagttctatgttaagattgctagcactttccaataaaagtagtgctagcaaaacaatctcttttcaacttgattgataaactttgtctagaac |
55939852 |
T |
|
| Q |
228 |
actctaaatcgcgtggagtttataagaatttcatccaattataaatagagcgttgaaaaagagagtgttagatagtatgtttacggccaatagtaataca |
327 |
Q |
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| T |
55939851 |
actctaaatcgcgtggaatttataagaatttcatccaattataaatagagcgttgaaaaagagagtgttagatagtatgtttacggccaatagtaataca |
55939752 |
T |
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| Q |
328 |
attagacagggtttcatatacatattccctttaactaaaaacatattacttagcatatttattagatgtaaaagactaatgtaaactaagaacaatacac |
427 |
Q |
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| T |
55939751 |
attagacagggtttcatatacagattccctttaactaaaaacatattacttagcatatttattagatgtaaaagactaatgtaaactaagaacaatacac |
55939652 |
T |
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| Q |
428 |
aacttgattttaggccgaatatcaaagaaaataacctaataaa-ccataaaacg |
480 |
Q |
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| T |
55939651 |
aacttgattttaggccgaatatcaaagaaaataacctaataaacccataaaacg |
55939598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 55940054 - 55940086
Alignment:
| Q |
1 |
aatatgtagaagtcaagaacagatcttttcgaa |
33 |
Q |
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| T |
55940054 |
aatatgtagaagtcaagaacagatcttttcgaa |
55940086 |
T |
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