View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19433_high_8 (Length: 215)
Name: NF19433_high_8
Description: NF19433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19433_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 8337619 - 8337809
Alignment:
| Q |
9 |
gaagaatataataaatgagatttggacatgaacacaagttggaaaaaacagatctgtaaaccatgtgaatttaagaaacaataagttatgactgaaaaaa |
108 |
Q |
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| T |
8337619 |
gaagaaaataataaatgagatttggacatgaacacaaattggaaaaaacagatctggaaaccatgtaaatttaagaaacaataagttatgactgaaaaaa |
8337718 |
T |
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| Q |
109 |
tggaagaacataaatcttcttacttttgtgatgtttaaaagcattagttaatgacatttaccagtaaatgaaagagggtaggaatgataaa |
199 |
Q |
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| T |
8337719 |
tggaagaacataaatcttcttacttttgtgatgtttaaaagcattagttaatgacgtttagcagtaaatgaaagagggtaggaatgataaa |
8337809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 10234898 - 10235089
Alignment:
| Q |
9 |
gaagaatataataaatgagatttggacatgaacacaagttggaaaaaacagatctgtaaaccatgtgaattt-aagaaacaataagttatgactgaaaaa |
107 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
10234898 |
gaagaaaataataaatgagatttggacataaacacaagttggaaaaaacagatctggaaaccatgtgatttttaagaaacaataagttatgactgaaaaa |
10234997 |
T |
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| Q |
108 |
atggaagaacataaatcttcttacttttgtgatgtttaaaagcattagttaatgacatttaccagtaaatgaaagagggtaggaatgataaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10234998 |
atggaagaacataaatcttcttacttttgtgatgtttaaaagcattagttaatgatgtttaccagtaaatgaaagagggtaggaatgataaa |
10235089 |
T |
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