View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19433_low_4 (Length: 411)
Name: NF19433_low_4
Description: NF19433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19433_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 151 - 268
Target Start/End: Complemental strand, 21907572 - 21907455
Alignment:
| Q |
151 |
ctagagattatcatctaccaaggattatttatttcacattgttcttatttgggaacctaacattagtaaactcagcaaattatatttgttcattttttaa |
250 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
21907572 |
ctagagatcatcatctaccagggattatttatttcacattgttcttatttgcgaacctaacgttagcaaactcagcaaattatatttgttcattttttaa |
21907473 |
T |
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| Q |
251 |
gcacaagccatatttagt |
268 |
Q |
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|||||||||||||||||| |
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| T |
21907472 |
gcacaagccatatttagt |
21907455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 21907716 - 21907677
Alignment:
| Q |
9 |
gacatcatcaaaccagctaacaaagaatgtaagaaatgat |
48 |
Q |
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| T |
21907716 |
gacatcaccaaaccaactaacaaagaatgtaagaaatgat |
21907677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 21907662 - 21907633
Alignment:
| Q |
61 |
tgaaagaggtaatcaagaaactccaatgtc |
90 |
Q |
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| T |
21907662 |
tgaaagaggtaatcaagaaactccaatgtc |
21907633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 151 - 296
Target Start/End: Complemental strand, 26556938 - 26556794
Alignment:
| Q |
151 |
ctagagattatcatctaccaaggattatttatttcacattgttcttatttgggaacctaacattagtaaactcagcaaattatatttgttcattttttaa |
250 |
Q |
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|||||| | ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||| ||||||||||| |
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| T |
26556938 |
ctagaggtcatcatctaccaaggattatctatttcacattgttcttatttgcgaacctaacatcagtaaactcaaccaattatatttg-tcattttttaa |
26556840 |
T |
|
| Q |
251 |
gcacaagccatatttagtcaaattttaagtactactatcaattttc |
296 |
Q |
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||||||||| |||||| |||| ||||||||||||||||| |||||| |
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| T |
26556839 |
gcacaagccgtatttattcaagttttaagtactactatcgattttc |
26556794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 26557125 - 26557086
Alignment:
| Q |
9 |
gacatcatcaaaccagctaacaaagaatgtaagaaatgat |
48 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |
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| T |
26557125 |
gacatcatcaaaccatctaacaaagaatgtaagaaatgat |
26557086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 26557070 - 26557041
Alignment:
| Q |
61 |
tgaaagaggtaatcaagaaactccaatgtc |
90 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
26557070 |
tgaaagaggtaatcaagaaactccaatgtc |
26557041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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