View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_high_1 (Length: 889)
Name: NF19434_high_1
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 743; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 8 - 873
Target Start/End: Original strand, 2788374 - 2789247
Alignment:
| Q |
8 |
ccaagaatatagtttgatactatagaccatagtatactttgacaaaagccacacttaaaagaaaacgaa-cacacacaattgaagcatgtcgcaaactca |
106 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2788374 |
ccaagaaaatagtttgatactatagaccatagtatactttgacaaaagccacacttaaaagaaaacgaaacacacacaattgaagcatgtcgcaaactca |
2788473 |
T |
|
| Q |
107 |
acaacaaatggaattatggatatggtgccttttattgttcctgaagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaatt |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788474 |
gcaacaactggaattatggatatggtgccttttattgttcctgaagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaatt |
2788573 |
T |
|
| Q |
207 |
ttcttttcctattcatgaattttagttttagataaaaaatccaaatcggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaa |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788574 |
ttcttttcctattcatgaattttagttttagattaaaaatccaaattggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaa |
2788673 |
T |
|
| Q |
307 |
tttttaaatgaattcgaatcgacacactgatgatctgaacaaatcaagagagaagatagaatgaaaaccattcatgttgtggtagtgagtgcacacaaat |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
2788674 |
tttttaaatgaattcgaatcgacacactgatgatctgaacaaatcaagagagaagatagaatgaaaaccattcatgttgtggtcgtgagtgc-cacaaat |
2788772 |
T |
|
| Q |
407 |
gaactgactgataaaaacaaacgacattaaaatgtatttttaattaagataacgctgattaaaataagaaagaattatacactatgctcagacgctactt |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788773 |
gaactgactgataaaaacaaacgacattaaaatgtatttttaattaagataacactgattaaaataagaaagaattatacactatgctcagacgctactt |
2788872 |
T |
|
| Q |
507 |
gagatagaatctg-------aagnnnnnnnnnncgttacatcagtgaaaaacactagaaacttgtgatagaagtaccgttaccaaagttttgttaccggt |
599 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2788873 |
gagatagaatctgaaaaaaaaaaaaaaaaaaaacgttacatcagtgaaaaacactagaaactcgtgatagaagtaccgttaccaaagttttgttaccggc |
2788972 |
T |
|
| Q |
600 |
ataccacatttagaggaacttcacaatcttgattcttgagcatagaatcggtgatatgacgtaccgttacaaatcaattctattttggtcatacgagctt |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788973 |
ataccacatttagaggaacttcacaatcttgattcttgagcatagaatcggtgatatgacgtaccgttacaaatcaattctattttggtcatacgagctt |
2789072 |
T |
|
| Q |
700 |
atgtattataagctatctgctataagttaacaattttaccttgcaaaatagaggctatgtagcaag-aaaaaagtagttaaaaggataaaaatggatgca |
798 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2789073 |
atgtattataagctatctgctataagttaacagttttaccttgcaaaatagaggctatgtagcaagaaaaaaagtagttaaaaggataaaaatggatgca |
2789172 |
T |
|
| Q |
799 |
tgtttgtcttttttatattttattgaaaggttattaacttgttaataacaatcatggttttatatgcttgatagt |
873 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2789173 |
tgtttgtcttttttatattttattgaaaggttattaacttgttgttaacaatcatggttttatatgcttgatagt |
2789247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 673 - 867
Target Start/End: Complemental strand, 2417433 - 2417237
Alignment:
| Q |
673 |
tcaattctattttggtcatacg--agcttatgtattataagctatctgctataagttaacaattttaccttgcaaaatagaggctatgtagcaagaaaaa |
770 |
Q |
| |
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|||||||||||||| ||||| | |||| |||| ||||||||||| |||||| |||||||| |||||||| || ||||| |||||||||||||||||||| |
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| T |
2417433 |
tcaattctattttgctcatatgtgagctcatgtgttataagctatatgctattagttaacagttttacctagcgaaataaaggctatgtagcaagaaaaa |
2417334 |
T |
|
| Q |
771 |
agtagttaaaaggataaaaatggatgcatgtttgtcttttttatattttattgaaaggttattaacttgttaataacaatcatggttttatatgctt |
867 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
2417333 |
agaagttgaaaggataaaaatggatgcatgtttgtcttttttatattttattgaaaggttattaacttgctgttaacaatcatggttttatatgctt |
2417237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 46121520 - 46121425
Alignment:
| Q |
153 |
taaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatccaaat |
252 |
Q |
| |
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|||||||||||||| ||||| ||||||| |||||||| |||||||||||| ||||| ||| | | || ||||||||||||||||||||| || |||| |
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| T |
46121520 |
taaattactttaat-tatgtcaatttcattttcaactcctctcttatctttattttttttgc----ttatcaattttagttttagataaaaagtctaaat |
46121426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 51 - 406
Target Start/End: Original strand, 22365146 - 22365504
Alignment:
| Q |
51 |
aaaagccacacttaaaagaaaacgaa-cacacacaattgaagcatgtcgcaaactcaacaacaaatggaattatggatatggtgccttttattgttcctg |
149 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22365146 |
aaaagccacactaaaaagaaaacgaaacacacacaattgaagcatgtcgcaaactcagcaacaaatggaattatggatatggtgctttttattgttcctt |
22365245 |
T |
|
| Q |
150 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatcca |
249 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
22365246 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctattatcttgattttcttttcctattcatgaattttagttttagatcaaaagtcca |
22365345 |
T |
|
| Q |
250 |
aatcggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaatgaattcgaatcgacacactgatgatctgaacaaa |
349 |
Q |
| |
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||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||| |
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| T |
22365346 |
aattggaactaacatataactgtataaatttaaaaaatctataacgatgttcaacaatttttcaatgaattcaaatcgacaaactgatgatctgaacaaa |
22365445 |
T |
|
| Q |
350 |
tcaagagagaagatagaatgaaaaccattcatgt--tgtggtagtgagtgcacacaaat |
406 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
22365446 |
tcaagagagaagatagaatgaaaatcatttatgttgtgtggtagtgagtgcacacaaat |
22365504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 22365045 - 22365085
Alignment:
| Q |
9 |
caagaatatagtttgatactatagaccatagtatactttga |
49 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
22365045 |
caagaaaatagtttgatactatagaccatagtatactttga |
22365085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 29782312 - 29782217
Alignment:
| Q |
153 |
taaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatccaaat |
252 |
Q |
| |
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|||||||||||||| ||||| ||||||| |||||||| |||||||||||| ||||| ||| | | || ||||||||||||||||||||| || |||| |
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|
| T |
29782312 |
taaattactttaat-tatgtcaatttcattttcaactcctctcttatctttattttttttgc----ttatcaattttagttttagataaaaagtctaaat |
29782218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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