View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_high_12 (Length: 393)
Name: NF19434_high_12
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 42291704 - 42291346
Alignment:
| Q |
18 |
ggtagcatacatagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtcttgcttccttttcagagaactctggcaatcgttttcca |
117 |
Q |
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| T |
42291704 |
ggtagcatacatagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtcttgcttgctttttagagaaatttggcaatcgttttcca |
42291605 |
T |
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| Q |
118 |
acaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaatagnnnnnnnnnnnntaatttcacgaa |
217 |
Q |
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| T |
42291604 |
acaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaatagaaaacttaaaaacaatttcacgaa |
42291505 |
T |
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| Q |
218 |
caattgttattgttgagaattactactatacgatatagtccaactaattatagaaacatggatcggttttggaattggtattatgatgatttcaaatgat |
317 |
Q |
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| T |
42291504 |
caattgttattgttgagaattactactatacgatatagtccaactaattatagaaacatggatcggttttggaattggtattatgatgatttcaaatgat |
42291405 |
T |
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| Q |
318 |
cgctttttattgtgatcattggagtaactaattaataacattttatggaaacttcttgttttgcacctttg |
388 |
Q |
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| T |
42291404 |
cgctttttattgtgatca-tggag-----------taacattttatggaaacttcttgttttgcacctttg |
42291346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 42155553 - 42155725
Alignment:
| Q |
18 |
ggtagcatacatagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtcttgcttccttttcagagaactctggcaatcgttttcca |
117 |
Q |
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| T |
42155553 |
ggtagcatacatagaggtataatagtttagtccaacgaaatcaaatgaccctttaagtagtcttgcttgctttttagagaactttggcaatcgttttcca |
42155652 |
T |
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| Q |
118 |
acaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaa |
190 |
Q |
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| T |
42155653 |
acaagacaatgcatgctttgtgggtattttcccgttgttagtggttccataaacctgtaatcaatgttacaaa |
42155725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 42165709 - 42165883
Alignment:
| Q |
19 |
gtagcatacatagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtcttgcttccttttcagagaactctggcaatcgttttccaa |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||| |
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| T |
42165709 |
gtagcatagttagaggtataatagtttagtccaaggaaatcaaatgaccctttaagtagtcttgcttgctttttagagaaatttggcaatcgttttccaa |
42165808 |
T |
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| Q |
119 |
caagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaatag |
193 |
Q |
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| T |
42165809 |
caagggaacgcatgctttttggatattttcccgttgttagtggttccatgaacctgtaatcattgttacaaatag |
42165883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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