View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_high_14 (Length: 353)
Name: NF19434_high_14
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_high_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 29611902 - 29612247
Alignment:
| Q |
15 |
agatgaattatatggaattaatagaccaaagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttc |
114 |
Q |
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| T |
29611902 |
agatgaattatatggaattaatagaccaaagaatatgatacaattacggtaggatacacctttatattgtgatcccaagttaactaacataataaacttc |
29612001 |
T |
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| Q |
115 |
catctaatcataattaacttctaactacctacacaaattctaacaaatatctaacacaaagtttttatttgatgtgcatgttttcaggacaactgcaccc |
214 |
Q |
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| T |
29612002 |
catctaatcataattaacttctaactacctaaacaaattctaacaaatatctaacac--agtttttatttgatgtgcatgttttcaggacaactgcacta |
29612099 |
T |
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| Q |
215 |
ctacacacattcgttccctgctttttcaag-aagtcaat--------acttgggattacaatcaacggtgagtacaaattgaggtttttggtttctgttc |
305 |
Q |
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| T |
29612100 |
ctacacagattcgttccctgctttttcaagtcaatcattactgaatcacttgggaccacaatcaacggtgagtacaaattgaggtttttggtttctgttc |
29612199 |
T |
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| Q |
306 |
cttctagcttgtaggtttctagctcattcttaaccagtgaatcacttt |
353 |
Q |
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| T |
29612200 |
cttctagcttgtaggtttctagctcattcttaaccagtgaatcacttt |
29612247 |
T |
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 38467228 - 38467139
Alignment:
| Q |
43 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaac |
132 |
Q |
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| T |
38467228 |
aagaatatgattcaattagggtaggatacatctttatatagtgatcccaagttaactaacataacaaatttccacctaatcataactaac |
38467139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 17236561 - 17236659
Alignment:
| Q |
43 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttctaacta |
141 |
Q |
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| T |
17236561 |
aagaatatgatacgattagagtaagatatacctttatacagtgatcccaaggtaactaacataattaacttccacctaatcataactaacttctaacta |
17236659 |
T |
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