View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_high_16 (Length: 325)
Name: NF19434_high_16
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_high_16 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 145 - 325
Target Start/End: Original strand, 32244238 - 32244415
Alignment:
| Q |
145 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
244 |
Q |
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| T |
32244238 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgca |
32244336 |
T |
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| Q |
245 |
tgcctataaattcttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttgg |
325 |
Q |
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| T |
32244337 |
tgcctatgaattcttaatttcctacacatcacattaag--atatatgtgcacagagacatcacagagtgtatatttgttgg |
32244415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 145 - 324
Target Start/End: Original strand, 32249947 - 32250123
Alignment:
| Q |
145 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
244 |
Q |
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| T |
32249947 |
agaacctgtggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgca |
32250045 |
T |
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| Q |
245 |
tgcctataaattcttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttg |
324 |
Q |
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| T |
32250046 |
tgcctatgaattcttaatttcctacacatcacattatgatagatatgtg--cagagacatcacagagggtatatttgttg |
32250123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 145 - 290
Target Start/End: Original strand, 32254767 - 32254912
Alignment:
| Q |
145 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
244 |
Q |
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| T |
32254767 |
agaacctgtggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgctaagttcatgacattcttcaccatgca |
32254866 |
T |
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| Q |
245 |
tgcctataaattcttaatttcctacacatcacattaagatatatat |
290 |
Q |
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| T |
32254867 |
tgcctatgaattcttaatttcctacacatcacattattatatatat |
32254912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 18542148 - 18542286
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatggagacccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggagga |
100 |
Q |
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| T |
18542148 |
agtttgtgaaatagaagaattcaaattaaaagtttcatggagacccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggagga |
18542247 |
T |
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| Q |
101 |
tcaaaaggtggatcaagcacaggaggaaatggcagtgaa |
139 |
Q |
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| T |
18542248 |
tcaaaaggtggatcaggcacaggaggaaatggtagtgaa |
18542286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 18555277 - 18555343
Alignment:
| Q |
73 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatggcagtgaa |
139 |
Q |
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| T |
18555277 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaggcacaggaggaaatggcggtgaa |
18555343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 18550295 - 18550358
Alignment:
| Q |
69 |
atggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatgg |
132 |
Q |
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| T |
18550295 |
atggagtaaaaggaaatggtggtaaaggaggatcaaagggtggatcaggctcaggcgaaaatgg |
18550358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18550227 - 18550267
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatgga |
41 |
Q |
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| T |
18550227 |
agttggtgaaatagaagaattcaaatcaaaagtttcatgga |
18550267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18555205 - 18555245
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatgga |
41 |
Q |
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| T |
18555205 |
agttggtgaaatagaagaattcaaatcaaaagtttcatgga |
18555245 |
T |
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