View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_high_19 (Length: 306)
Name: NF19434_high_19
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 33443427 - 33443148
Alignment:
| Q |
11 |
aaaggtatgcaacggtcacccgacacaatcgaatcggaaattctggttctgaactcagcctcaatgatttcgctgatctatcctgggttgaacttgctca |
110 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443427 |
aaaggtatgcaacggtcacccgacacaatcaaatcggaaattctggttctgaactcagcctcaatgatttcgctgatctatcctgggttgaacttgctca |
33443328 |
T |
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| Q |
111 |
tcttagggaaggacgtccatcaccaatgattttagggtaattgttctaaagagtatatgttgagtaattgtgcaataaggtctacatggttgtgagttta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443327 |
acttagggaaggacgtccatcaccaatgattttagggtaattgttctaaagagtatatgttgagtaattgtgcaataaggtctacatggttgtgagttta |
33443228 |
T |
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| Q |
211 |
ctaacaatcatgatttggaccttgctattttatttatgctagttaaataaatcatgtattcaaaattgattgcttgctta |
290 |
Q |
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| T |
33443227 |
ctcacaatcatgatttggaccttgctattttatttatgctagttaaataaatcatgtattcaaaattgcttgcttgctta |
33443148 |
T |
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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 8578337 - 8578475
Alignment:
| Q |
11 |
aaaggtatgcaacggtcacccgacacaatcgaatcggaaattctggttctgaactcagcctcaatgatttcgctgatctatcctgggttgaacttgctca |
110 |
Q |
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|||||||||||| | |||| | || |||| |||||||||||||||||| ||||| || |||||||||| || ||||||||||| |||||||| ||||| |
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| T |
8578337 |
aaaggtatgcaatgatcacacaccataatcaaatcggaaattctggttccaaactcggcttcaatgattttgccgatctatcctgtgttgaactcgctca |
8578436 |
T |
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| Q |
111 |
tcttagggaaggacgtccatcaccaatgattttagggta |
149 |
Q |
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|||| ||||||||| ||||||||| ||| | |||||||| |
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| T |
8578437 |
tcttggggaaggacatccatcaccgatggtgttagggta |
8578475 |
T |
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