View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19434_high_23 (Length: 281)
Name: NF19434_high_23
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 29612225 - 29612477
Alignment:
| Q |
13 |
attcttaaccagtgaatcacttttttaaattacatatattaggtcataaaatcccctcatacaaacacatggcaaacattactgaattcttgttatattg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29612225 |
attcttaaccagtgaatcacttttttaaattacatatattaggtcataaaatcccctcatacaaacacatggcaaacattactgaattcttgttatattg |
29612324 |
T |
|
| Q |
113 |
cagaattttcagaatgttgtgggagatattgagatttcatggaaggtttctagtggcaacgcattatggagactagttggccttgtgtcaagtgtatttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29612325 |
cagaattttcagaatgttgtgggagatattcagatttcatcgaaggtttctagtggcaacgcattttggagactagttggccttgtgtcaagtgtatttg |
29612424 |
T |
|
| Q |
213 |
gcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatgg |
265 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29612425 |
gcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatgg |
29612477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 29529077 - 29528995
Alignment:
| Q |
179 |
tggagactagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaag |
261 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| ||||||| || |||||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
29529077 |
tggagagtagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaag |
29528995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 29524602 - 29524688
Alignment:
| Q |
179 |
tggagactagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatgg |
265 |
Q |
| |
|
|||||| ||||||| |||||||||||||| | |||||||| ||| || ||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
29524602 |
tggagaatagttggaattgtgtcaagtgtagtaggcctattatgtaatgctcagagccattctttcaatcgtttcattggaaaatgg |
29524688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 29475402 - 29475320
Alignment:
| Q |
178 |
atggagactagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaa |
260 |
Q |
| |
|
||||||| ||||||||||| |||||||| || | || || | |||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
29475402 |
atggagagtagttggccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaa |
29475320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University