View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19434_high_26 (Length: 276)
Name: NF19434_high_26
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 52133151 - 52132877
Alignment:
| Q |
1 |
ctttacctagctatctcatcaagatttcaatactcaagnnnnnnn-gacgccaactaaatttgaatgaaatttcaccctactttaaaaatttgaggttga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
52133151 |
ctttacctagctatctcatcaagatttcaatactcatgaaaaaaaagacgccaactaaatttgaatgaaatttcaccttattttaaaaatttgaggttga |
52133052 |
T |
|
| Q |
100 |
agatagtcatttaataaacctgattcagattcaactgctctttaataatttcttctcttttacactcaacaccaagcagcaaccaaaagaaacctacaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52133051 |
agatagtcatttaataaacctgattcagattcaactgctcttcaataatttcttctcttttacactcaacaccaagcagcaaccaaaagaaacctaaaaa |
52132952 |
T |
|
| Q |
200 |
acaaattaaaaagatgatgttcttgaaagacgtcaagttcgattgagaaatcattttctgttttttccctatgct |
274 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
52132951 |
acaaattaaaaagatgatgttcattaaagacgtcaagttcggatgtgaaatcattttctgttttttccctatgct |
52132877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University