View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19434_high_29 (Length: 223)

Name: NF19434_high_29
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19434_high_29
NF19434_high_29
[»] chr4 (3 HSPs)
chr4 (25-208)||(37565946-37566129)
chr4 (73-120)||(24393608-24393655)
chr4 (71-112)||(21027922-21027963)
[»] chr6 (1 HSPs)
chr6 (27-120)||(2725820-2725913)
[»] chr8 (6 HSPs)
chr8 (51-113)||(33581852-33581914)
chr8 (41-102)||(33102095-33102156)
chr8 (51-113)||(12750161-12750223)
chr8 (41-111)||(22842156-22842226)
chr8 (41-113)||(34363045-34363116)
chr8 (84-120)||(38006590-38006626)
[»] chr1 (5 HSPs)
chr1 (54-120)||(32827723-32827789)
chr1 (57-120)||(9873756-9873819)
chr1 (27-117)||(52186888-52186978)
chr1 (51-120)||(21322569-21322638)
chr1 (73-109)||(44973343-44973379)
[»] chr5 (1 HSPs)
chr5 (41-113)||(37442598-37442669)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 37565946 - 37566129
Alignment:
Q  25 gttcattcccgccgataaatacattagcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagcggtactcgtga 124  Q
    ||||||| ||||||||||||||||| | ||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||    
T  37565946 gttcatttccgccgataaatacatttgtgtgagttaatttatgctcggctattttgatagaaatgaggaaaaacagatggaacaagagcggtactcgcga 37566045  T
Q  125 atttgtgccttcaagtcagtgaggcgttgatgcaaaatcagtggcagagcttgactaatttattgaagggccaactaggttgat 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37566046 atttgtgccttcaagtcagtgaggcattgatgcaaaatcagtggcagagcttgactaatttattgaagggccaactaggttgat 37566129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 24393655 - 24393608
Alignment:
Q  73 ctattttgataggaatgaggaaaaacagatggaagaagagcggtactc 120  Q
    |||||||||| |||||||| |||||||||||| |||||||||||||||    
T  24393655 ctattttgatgggaatgagcaaaaacagatgggagaagagcggtactc 24393608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 21027922 - 21027963
Alignment:
Q  71 ggctattttgataggaatgaggaaaaacagatggaagaagag 112  Q
    ||||||||||| ||||||||| |||||||||||| |||||||    
T  21027922 ggctattttgacaggaatgagcaaaaacagatgggagaagag 21027963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 2725820 - 2725913
Alignment:
Q  27 tcattcccgccgataaatacattagcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagcggtactc 120  Q
    |||||||||| || ||| ||| | ||||||||||||| | ||| |||||||||||  |||||||| |||||||||||| |||||||| ||||||    
T  2725820 tcattcccgctgagaaacacacttgcgtgagttaactcacgctcggctattttgacgggaatgagcaaaaacagatgggagaagagcagtactc 2725913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 33581852 - 33581914
Alignment:
Q  51 gcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagc 113  Q
    ||||||||||||| | |||||||||||||| | |||||||| |||| ||||||||||||||||    
T  33581852 gcgtgagttaactcacgctaggctattttgttgggaatgagcaaaatcagatggaagaagagc 33581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 33102095 - 33102156
Alignment:
Q  41 aaatacattagcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagat 102  Q
    ||||||||| ||||||||||||| | ||| |||||||||||  |||||||| ||||||||||    
T  33102095 aaatacatttgcgtgagttaactcacgctcggctattttgacgggaatgagcaaaaacagat 33102156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 12750223 - 12750161
Alignment:
Q  51 gcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagc 113  Q
    ||||||||||||| | ||| |||||||| ||  || |||||||||||||||||| ||||||||    
T  12750223 gcgtgagttaactcacgctcggctatttggacggggatgaggaaaaacagatgggagaagagc 12750161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 22842226 - 22842156
Alignment:
Q  41 aaatacattagcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaaga 111  Q
    |||||||||  |||||||||||| | ||| | |||||||||  |||||||| |||||||||||| ||||||    
T  22842226 aaatacatttacgtgagttaactcacgctcgactattttgacgggaatgagaaaaaacagatgggagaaga 22842156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 34363045 - 34363116
Alignment:
Q  41 aaatacattagcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagc 113  Q
    ||||||||  |||| |||||||||| ||| |||||||| ||||| |||||  ||||||||||||| |||||||    
T  34363045 aaatacatctgcgtaagttaacttaagctcggctattt-gatagaaatgaacaaaaacagatggatgaagagc 34363116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 38006590 - 38006626
Alignment:
Q  84 ggaatgaggaaaaacagatggaagaagagcggtactc 120  Q
    |||||||| |||||||||||| |||||||||||||||    
T  38006590 ggaatgagcaaaaacagatgggagaagagcggtactc 38006626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 32827789 - 32827723
Alignment:
Q  54 tgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagcggtactc 120  Q
    ||||||||| ||  || ||||||||||| ||||||||| |||||||||||| |||||||| ||||||    
T  32827789 tgagttaacctacactcggctattttgacaggaatgagcaaaaacagatgggagaagagcagtactc 32827723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 9873756 - 9873819
Alignment:
Q  57 gttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagcggtactc 120  Q
    ||||||||| | | |||||||||||  ||||| || |||||||||||| |||||||||||||||    
T  9873756 gttaacttacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactc 9873819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 52186888 - 52186978
Alignment:
Q  27 tcattcccgccgataaatacattagcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagcggta 117  Q
    |||||||| | ||||||||||   ||||||||||||| | ||| |||||||||||| | | |||| |||||||||| | | ||||||||||    
T  52186888 tcattcccactgataaatacacctgcgtgagttaactcacgctcggctattttgatggaagtgagcaaaaacagataggaaaagagcggta 52186978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 21322569 - 21322638
Alignment:
Q  51 gcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagcggtactc 120  Q
    ||||||||||||| |  || |||||||||||  ||| |||| |||||||||||| |||||||| ||||||    
T  21322569 gcgtgagttaactcaccctcggctattttgacgggattgagcaaaaacagatgggagaagagcagtactc 21322638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 44973379 - 44973343
Alignment:
Q  73 ctattttgataggaatgaggaaaaacagatggaagaa 109  Q
    |||||||||| |||||||| |||||||||||||||||    
T  44973379 ctattttgatcggaatgagtaaaaacagatggaagaa 44973343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 37442598 - 37442669
Alignment:
Q  41 aaatacattagcgtgagttaacttatgctaggctattttgataggaatgaggaaaaacagatggaagaagagc 113  Q
    ||||||||  || |||||||||| | ||| |||||||| ||  |||||||| |||||||||||||||||||||    
T  37442598 aaatacatctgcatgagttaactcacgctcggctattt-gacgggaatgagcaaaaacagatggaagaagagc 37442669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University