View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_high_5 (Length: 510)
Name: NF19434_high_5
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Complemental strand, 38153054 - 38152571
Alignment:
| Q |
18 |
aattttttcacataaaaagaataccaatatggattatatatgaataatgcaggttacaaggctcaaacgagagagccaaaagtgcatttgttgacaaatg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38153054 |
aattttttcacataaaaagaataccaatatggattatatatgaatgatgcaggttacaaggctcaaacgagagagccaaaagtgcatttgttgacaaatg |
38152955 |
T |
|
| Q |
118 |
gatagaagctcattttaaggactcaaacactattttagggaagcccattattgtacaagagtttggaaagtcttcaaagtcacctggatttaccgtagct |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38152954 |
gatagaagctcattttaaggactcaaacactattttagggaagcccattattgtacaagagtttggaaagtcttcaaagtcacctggatttaccgtagct |
38152855 |
T |
|
| Q |
218 |
ataagggataattacttcaagaaagtatacaatgccatagctacaagtgctatgagtggaggctcatgtacaggtggaattttctggcaactcatgtctc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38152854 |
ataagggataattacttcaagaaagtatacaatgccatagctacaagtgctatgagtggaggctcatgtgcaggtggaattttctggcaactcatgtctc |
38152755 |
T |
|
| Q |
318 |
aaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38152754 |
aaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaat |
38152655 |
T |
|
| Q |
418 |
caaatagtagaattgcagaaagtacccatttttatttttacagaaccaatccattttccttatccatcaaaataagagtataat |
501 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38152654 |
caaatagtagaattgcagaaagtacccatttttctttttacagaaccaatccattttccttatccatcaaaataagagtctaat |
38152571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 441
Target Start/End: Complemental strand, 38141162 - 38140737
Alignment:
| Q |
20 |
ttttttcacata---aaaagaataccaatatggattatatatgaat-aatgcaggttacaaggctcaaacgagagagccaaaagtgcatttgttgacaaa |
115 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38141162 |
ttttttcacataaaaaaaaaaataccaatctggattatatatgaatgaatgtaggttacaaggctcaaacgagacagccaaaagtgcatttgttgacaaa |
38141063 |
T |
|
| Q |
116 |
tggatagaagctcattttaaggactcaaacactattttagggaagcccattattgtacaagagtttggaaagtcttcaaagtcacctggatttaccgtag |
215 |
Q |
| |
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|||||||||||||||||| | |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |
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| T |
38141062 |
tggatagaagctcattttcatgactcaaatactattttaggaaaacccattattgtacaagagtttggaaagtcttcaaagacacctggatttagcatag |
38140963 |
T |
|
| Q |
216 |
ctataagggataattacttcaagaaagtatacaatgccatagctacaagtgctatgagtggaggctcatgtacaggtggaattttctggcaactcatgtc |
315 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |
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| T |
38140962 |
ctataagggatagttactttaagaaagtatacaatgccatatctaaaagtgctatgagtggaggctcatgtgcaggtggaattttctggctacttctgtc |
38140863 |
T |
|
| Q |
316 |
tcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaa |
415 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38140862 |
tcaaggaatggatacctatggagatggctatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaa |
38140763 |
T |
|
| Q |
416 |
atcaaatagtagaattgcagaaagta |
441 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
38140762 |
atcaaatagtagaattgcagaaagta |
38140737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 56 - 438
Target Start/End: Complemental strand, 38108666 - 38108284
Alignment:
| Q |
56 |
tatgaataatgcaggttacaaggctcaaacgagagagccaaaagtgcatttgttgacaaatggatagaagctcattttaaggactcaaacactattttag |
155 |
Q |
| |
|
||||||| || ||||||||| |||||||| || | ||| |||||| |||||||| ||||||||||||||||| || | |||||||| ||||||||| |
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|
| T |
38108666 |
tatgaatgatacaggttacagggctcaaatgaaacagctaaaagtcactttgttgatgaatggatagaagctcatattcaagactcaaatactattttaa |
38108567 |
T |
|
| Q |
156 |
ggaagcccattattgtacaagagtttggaaagtcttcaaagtcacctggatttaccgtagctataagggataattacttcaagaaagtatacaatgccat |
255 |
Q |
| |
|
|||||| | || || ||||||||||||||||||||| |||| ||||| || | |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38108566 |
aaaagcccttggttatagcagagtttggaaagtcttcaaaatcacatggatatagcatagctataagggataattactttaagaaagtatacaatgccat |
38108467 |
T |
|
| Q |
256 |
agctacaagtgctatgagtggaggctcatgtacaggtggaattttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatt |
355 |
Q |
| |
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| ||| ||||||||| | ||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||| |||||||| || |
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| T |
38108466 |
atctagaagtgctatcaatggaggctcatgtgcaggtggaattttctggcaactcctatctcaagggatggatacctatggagatggatatgaagtcgtt |
38108367 |
T |
|
| Q |
356 |
tttgagaacaatccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaatcaaatagtagaattgcagaaa |
438 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||||||||| ||| |||||| | ||||||||||||| || |||||| |
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|
| T |
38108366 |
tttgagaattgtccttcaactggtgagatcatcaaacaacaatctatgaagatgtcacatatcaaatagtagattttcagaaa |
38108284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 64 - 438
Target Start/End: Complemental strand, 38084494 - 38084120
Alignment:
| Q |
64 |
atgcaggttacaaggctcaaacgagagagccaaaagtgcatttgttgacaaatggatagaagctcattttaaggactcaaacactattttagggaagccc |
163 |
Q |
| |
|
||||||| ||||||||||| | |||| || ||| || ||||||||| |||||||||| ||| || || |||| ||||| ||| ||||||| ||||| |
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|
| T |
38084494 |
atgcaggatacaaggctcagaagagactacccaaaatgtatttgttgataaatggataggagcacacattcaggattcaaatactgttttaggaaagcca |
38084395 |
T |
|
| Q |
164 |
attattgtacaagagtttggaaagtcttcaaagtcacctggatttaccgtagctataagggataattacttcaagaaagtatacaatgccatagctacaa |
263 |
Q |
| |
|
|| ||| || ||||||||||||||||||||||||| |||||| || | ||| || |||||| | |||||| ||||||||||||||||||||| |||||| |
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|
| T |
38084394 |
ataattatagcagagtttggaaagtcttcaaagtcagctggatatagcatagataaaagggacagttactttaagaaagtatacaatgccatatctacaa |
38084295 |
T |
|
| Q |
264 |
gtgctatgagtggaggctcatgtacaggtggaattttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaa |
363 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||| | |||||||| ||||||||||||||||||| |
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|
| T |
38084294 |
gtgctatcagtggaggctcatgtgcaggtggaattttttggcaactcctgtctcaagggatggataacatgggagatggctatgaagtcatttttgagaa |
38084195 |
T |
|
| Q |
364 |
caatccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaatcaaatagtagaattgcagaaa |
438 |
Q |
| |
|
| || ||||||| || | |||||||||||||||||| | | |||||||| |||| | || ||||||| ||||| |
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|
| T |
38084194 |
tagtctttcaacttcccaagtcatcaaacaacaatctttaaaaatgtcaagtatcagaaagcagaattgaagaaa |
38084120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 92 - 425
Target Start/End: Complemental strand, 38089498 - 38089165
Alignment:
| Q |
92 |
gccaaaagtgcatttgttgacaaatggatagaagctcattttaaggactcaaacactattttagggaagcccattattgtacaagagtttggaaagtctt |
191 |
Q |
| |
|
|||||| ||| |||| |||| |||||||||| ||| ||| || | || |||| |||||||||| ||||| || ||||||||||||||||||| || || |
|
|
| T |
38089498 |
gccaaaggtgtattttttgataaatggataggagcacatattcaagatgcaaatactattttagtaaagccaatcattgtacaagagtttggaacgtttt |
38089399 |
T |
|
| Q |
192 |
caaagtcacctggatttaccgtagctataagggataattacttcaagaaagtatacaatgccatagctacaagtgctatgagtggaggctcatgtacagg |
291 |
Q |
| |
|
||| || |||||||| | | || | |||||| | |||||| || ||| | || | ||||||| ||||||||||||| |||||||||||||| | || |
|
|
| T |
38089398 |
caaggttacctggatatcgcacagatcaaagggacagttactttaacaaaatttatagtgccatatctacaagtgctatcagtggaggctcatgcgcggg |
38089299 |
T |
|
| Q |
292 |
tggaattttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || || |||| ||||||||||| || || ||||||| | |
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|
| T |
38089298 |
tggaattttctggcaactcatgtctcaaggaatggatggctatggagatggttatgaagttgttcttaagaataatccttcaaccgcagaagtcatcaga |
38089199 |
T |
|
| Q |
392 |
caacaatctgtgacaatgtcaaaaatcaaatagt |
425 |
Q |
| |
|
||||||||| ||| |||||||| ||||| |||| |
|
|
| T |
38089198 |
caacaatctctgaagatgtcaaatatcaagtagt |
38089165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 253 - 420
Target Start/End: Original strand, 37070490 - 37070657
Alignment:
| Q |
253 |
catagctacaagtgctatgagtggaggctcatgtacaggtggaattttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtc |
352 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||| |||||| ||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
37070490 |
catatctacaagtgatattagtggaggctcatgtgcaggtgagattttctagcaacttatgtctcaaggaatggatggctatggagatggttatgaagtt |
37070589 |
T |
|
| Q |
353 |
atttttgagaacaatccttcaactgccgaggtcatcaaacaacaatctgtgacaatgtcaaaaatcaa |
420 |
Q |
| |
|
|| ||||||| ||||||||| | || |||||||||||||||||| ||| |||||||| ||||| |
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|
| T |
37070590 |
gttcttgagaataatccttcagtgacagaagtcatcaaacaacaatctctgaatatgtcaaatatcaa |
37070657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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