View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19434_low_10 (Length: 436)

Name: NF19434_low_10
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19434_low_10
NF19434_low_10
[»] chr7 (15 HSPs)
chr7 (10-420)||(43510842-43511252)
chr7 (49-420)||(7460572-7460943)
chr7 (49-160)||(48462092-48462205)
chr7 (218-375)||(34535776-34535926)
chr7 (57-160)||(6376375-6376479)
chr7 (360-420)||(17813987-17814047)
chr7 (57-116)||(10017938-10017997)
chr7 (48-119)||(17813976-17814047)
chr7 (48-123)||(22566303-22566378)
chr7 (49-158)||(24185670-24185779)
chr7 (354-420)||(43510891-43510957)
chr7 (356-418)||(48461805-48461867)
chr7 (347-397)||(48462092-48462142)
chr7 (363-420)||(10017938-10017995)
chr7 (356-420)||(7460582-7460646)
[»] chr2 (26 HSPs)
chr2 (68-397)||(29526658-29526986)
chr2 (48-311)||(13490174-13490437)
chr2 (49-366)||(6795266-6795583)
chr2 (235-376)||(14473717-14473858)
chr2 (235-420)||(32622229-32622415)
chr2 (51-129)||(26845513-26845591)
chr2 (100-160)||(15988549-15988610)
chr2 (244-318)||(27956920-27956991)
chr2 (106-309)||(44995209-44995414)
chr2 (288-397)||(24015874-24015983)
chr2 (236-397)||(43513747-43513908)
chr2 (348-408)||(1353132-1353192)
chr2 (57-123)||(1353140-1353206)
chr2 (48-122)||(14473506-14473580)
chr2 (356-409)||(13140312-13140365)
chr2 (48-163)||(6412465-6412580)
chr2 (360-420)||(38262873-38262933)
chr2 (343-382)||(24065952-24065991)
chr2 (246-377)||(24283882-24284013)
chr2 (68-157)||(13140310-13140400)
chr2 (321-379)||(24284073-24284131)
chr2 (57-150)||(38262841-38262935)
chr2 (356-417)||(13490188-13490249)
chr2 (356-409)||(26845519-26845572)
chr2 (356-420)||(6795509-6795573)
chr2 (343-375)||(27956810-27956842)
[»] chr1 (33 HSPs)
chr1 (46-365)||(48171529-48171851)
chr1 (45-311)||(35795462-35795732)
chr1 (46-375)||(142809-143141)
chr1 (57-311)||(36783224-36783481)
chr1 (48-160)||(37245637-37245750)
chr1 (45-160)||(14420079-14420195)
chr1 (48-374)||(19987334-19987660)
chr1 (48-160)||(143113-143226)
chr1 (49-309)||(3072979-3073240)
chr1 (48-305)||(33459895-33460148)
chr1 (48-159)||(6043448-6043557)
chr1 (49-127)||(33460219-33460297)
chr1 (352-420)||(33460219-33460287)
chr1 (46-144)||(22792288-22792387)
chr1 (238-311)||(30971999-30972073)
chr1 (45-123)||(48171439-48171517)
chr1 (48-160)||(8718496-8718609)
chr1 (347-420)||(18519618-18519691)
chr1 (347-420)||(31872719-31872792)
chr1 (48-160)||(42604630-42604743)
chr1 (49-160)||(34517965-34518077)
chr1 (244-336)||(37245824-37245915)
chr1 (42-160)||(31872899-31873017)
chr1 (352-419)||(37245649-37245716)
chr1 (359-409)||(48171777-48171827)
chr1 (48-93)||(8718407-8718452)
chr1 (286-375)||(18519402-18519491)
chr1 (48-160)||(35795313-35795426)
chr1 (355-420)||(36783414-36783479)
chr1 (356-420)||(19987345-19987409)
chr1 (347-375)||(19987419-19987447)
chr1 (57-160)||(22792577-22792681)
chr1 (356-420)||(48171453-48171517)
[»] chr4 (42 HSPs)
chr4 (48-375)||(45505059-45505387)
chr4 (48-420)||(37724439-37724797)
chr4 (49-160)||(4416777-4416889)
chr4 (244-383)||(43913471-43913610)
chr4 (48-311)||(11306402-11306666)
chr4 (133-311)||(20268952-20269128)
chr4 (48-160)||(17524503-17524616)
chr4 (44-160)||(45505359-45505476)
chr4 (238-375)||(46397391-46397528)
chr4 (48-160)||(49984098-49984211)
chr4 (48-374)||(4416476-4416804)
chr4 (44-336)||(48845836-48846130)
chr4 (244-374)||(12293093-12293224)
chr4 (48-277)||(49983793-49984023)
chr4 (48-160)||(17524204-17524317)
chr4 (43-159)||(48845707-48845824)
chr4 (51-160)||(4592655-4592765)
chr4 (254-380)||(52485422-52485548)
chr4 (68-160)||(18414742-18414835)
chr4 (290-397)||(17524267-17524374)
chr4 (272-375)||(45170711-45170814)
chr4 (106-155)||(20870857-20870906)
chr4 (62-153)||(12714764-12714856)
chr4 (356-420)||(18415024-18415088)
chr4 (44-123)||(20268890-20268970)
chr4 (49-160)||(20269164-20269276)
chr4 (353-420)||(17524215-17524282)
chr4 (48-123)||(37724733-37724808)
chr4 (113-160)||(40426091-40426138)
chr4 (106-160)||(46397364-46397419)
chr4 (358-420)||(20269204-20269266)
chr4 (356-406)||(24671977-24672027)
chr4 (356-409)||(4592693-4592746)
chr4 (356-409)||(12292911-12292964)
chr4 (356-409)||(18414744-18414797)
chr4 (56-160)||(36752867-36752972)
chr4 (343-380)||(40426105-40426142)
chr4 (356-420)||(11306591-11306655)
chr4 (51-150)||(12292892-12292992)
chr4 (352-420)||(17524537-17524605)
chr4 (356-420)||(36752870-36752934)
chr4 (356-420)||(45505397-45505461)
[»] scaffold0056 (2 HSPs)
scaffold0056 (48-375)||(62811-63136)
scaffold0056 (48-160)||(62726-62839)
[»] chr3 (11 HSPs)
chr3 (48-375)||(33419625-33419954)
chr3 (46-311)||(37285697-37285962)
chr3 (48-311)||(48618480-48618745)
chr3 (68-160)||(51388058-51388151)
chr3 (47-160)||(33241845-33241959)
chr3 (48-154)||(37285548-37285655)
chr3 (322-391)||(30548006-30548075)
chr3 (352-409)||(51388092-51388149)
chr3 (48-139)||(19541154-19541246)
chr3 (48-155)||(30547740-30547846)
chr3 (355-411)||(37285884-37285940)
[»] chr8 (28 HSPs)
chr8 (48-375)||(34439307-34439636)
chr8 (46-173)||(9710214-9710342)
chr8 (49-160)||(34687755-34687867)
chr8 (46-160)||(7645083-7645198)
chr8 (235-375)||(18548623-18548761)
chr8 (49-311)||(16049629-16049889)
chr8 (48-160)||(7644780-7644892)
chr8 (49-160)||(18548539-18548651)
chr8 (48-159)||(18935053-18935165)
chr8 (287-420)||(18429453-18429586)
chr8 (56-160)||(18935348-18935453)
chr8 (48-160)||(34439222-34439335)
chr8 (48-163)||(32665844-32665959)
chr8 (46-159)||(4623067-4623181)
chr8 (359-420)||(4623441-4623502)
chr8 (48-93)||(7535300-7535345)
chr8 (48-123)||(18429442-18429517)
chr8 (244-314)||(35731689-35731757)
chr8 (49-123)||(23871002-23871076)
chr8 (100-160)||(4623371-4623432)
chr8 (100-160)||(7535553-7535614)
chr8 (352-409)||(7644801-7644858)
chr8 (106-163)||(9081231-9081288)
chr8 (107-159)||(25879855-25879908)
chr8 (352-420)||(7645117-7645185)
chr8 (356-420)||(9710227-9710291)
chr8 (238-318)||(23871293-23871373)
chr8 (347-379)||(34687835-34687867)
[»] chr6 (21 HSPs)
chr6 (48-375)||(10567548-10567873)
chr6 (244-420)||(28613206-28613385)
chr6 (49-160)||(32629064-32629176)
chr6 (48-160)||(6611937-6612050)
chr6 (48-160)||(34829855-34829968)
chr6 (239-375)||(29674962-29675090)
chr6 (286-375)||(34829794-34829883)
chr6 (356-420)||(34829893-34829957)
chr6 (66-158)||(6273889-6273982)
chr6 (69-122)||(34829602-34829655)
chr6 (68-147)||(22793321-22793401)
chr6 (64-122)||(28705848-28705906)
chr6 (356-409)||(22793323-22793376)
chr6 (49-122)||(22793606-22793679)
chr6 (43-123)||(6273612-6273692)
chr6 (246-303)||(6273786-6273845)
chr6 (356-420)||(6611975-6612039)
chr6 (343-375)||(10567757-10567789)
chr6 (189-277)||(11122040-11122128)
chr6 (348-420)||(22793597-22793669)
chr6 (357-409)||(34829603-34829655)
[»] scaffold0548 (2 HSPs)
scaffold0548 (48-311)||(3180-3444)
scaffold0548 (356-420)||(3369-3433)
[»] scaffold0400 (4 HSPs)
scaffold0400 (48-159)||(9873-9985)
scaffold0400 (354-420)||(9908-9974)
scaffold0400 (360-420)||(9590-9650)
scaffold0400 (48-119)||(9579-9650)
[»] scaffold0365 (4 HSPs)
scaffold0365 (48-159)||(10516-10628)
scaffold0365 (354-420)||(10551-10617)
scaffold0365 (360-420)||(10233-10293)
scaffold0365 (48-119)||(10222-10293)
[»] chr5 (7 HSPs)
chr5 (48-309)||(33992335-33992597)
chr5 (48-160)||(19935434-19935546)
chr5 (49-160)||(25508104-25508216)
chr5 (310-375)||(33992420-33992485)
chr5 (48-160)||(33992635-33992748)
chr5 (49-160)||(16642751-16642863)
chr5 (129-161)||(41563800-41563832)
[»] scaffold0015 (1 HSPs)
scaffold0015 (48-119)||(47417-47488)
[»] scaffold0045 (2 HSPs)
scaffold0045 (48-80)||(29610-29642)
scaffold0045 (360-420)||(29621-29681)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 43510842 - 43511252
Alignment:
Q  10 acatcatcactttcacaagaatgtatagaatcatatgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgcttta 109  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  43510842 acatcataactttcacaagaatatatagattcatatgacttaattacatgtttggtctcttatgtttatttcaagttttaagttaattcattatgtttta 43510941  T
Q  110 aaagtttcaagttgatccttatattttaaatgttttaagttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaa 209  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  43510942 aaagtttcaagttgattcttatattttaaatgtttcaagttggtccaaaacgttaatcacatctatataagttagcaacttccatcacttaatcgtttaa 43511041  T
Q  210 atatctgagttgaaaatatggattctggaatttgacttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcat 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  43511042 atatctgagttgaaaatatgggttctggaatttgacttatttacaaaatcagtttaaaaacattttttacttttatttgttttattaaactcaatatcac 43511141  T
Q  310 gtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43511142 gtggtggaataaactaacttattttaagatagataatgttttggatcaacttgaaacttttaaaacataaaagatcatcttaaaacttaaaataaacata 43511241  T
Q  410 ggagatcaaac 420  Q
     ||||||||||    
T  43511242 agagatcaaac 43511252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 420
Target Start/End: Original strand, 7460572 - 7460943
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgttttaa 147  Q
    |||||| |||||||| || ||||||||||||| |  ||| |||||  | | ||||| ||||||| |||||||||| ||| |||  |||||||  ||| ||    
T  7460572 ttaatttcatgtttgatcccttatgtttattttagttttcaagttgatcccttatgttttaaaaatttcaagttggtcccttacgttttaaaaatttcaa 7460671  T
Q  148 gttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgactt 247  Q
    |||||||||||||  |   ||| |  | ||||||||| |  |||| |||||||| |||||||| || || ||||| |||| || |  | ||| || ||||    
T  7460672 gttggtccaaaacactacccacgttgaaataagttagtcttttccgtcacttaa-cgtttaaagatttgggttgataatacgggtgatagaacttaactt 7460770  T
Q  248 atttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatg 347  Q
    || || ||||||||||||||| | |||| || ||||  | |||||||||||||||||||||||| | | || | ||||| ||||| |||  |   ||| |    
T  7460771 atatagaaaatcagtttaaaacctttttctaatttttttggttttattaaactcaatatcatgtcgcgaaagagactaacttattccaacgtgagtaacg 7460870  T
Q  348 ttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||| || ||| ||||||||||||||||||||  || || ||| |||  ||||||||||||| | ||||||||    
T  7460871 ttttagaccaatttgaaacttttaaaacataagtgaccaacttgaaaactaaaataaacataagggatcaaac 7460943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 48462205 - 48462092
Alignment:
Q  49 ttaattacatgtttggtctcttatg-tttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgtttta 146  Q
    ||||||||||||||| ||||||||| ||||||| |  ||||||||| || | ||||| |||||||||||||||||| ||  |||| ||||||| ||||||    
T  48462205 ttaattacatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtttcaagttggtcatttatgttttaaaagtttta 48462106  T
Q  147 agttggtccaaaac 160  Q
    ||||| ||||||||    
T  48462105 agttgatccaaaac 48462092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 218 - 375
Target Start/End: Complemental strand, 34535926 - 34535776
Alignment:
Q  218 gttgaaaatatggattctggaatttgacttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtgga 317  Q
    ||||| |||||||||| ||||| || ||||||||| ||||||||||| ||||| ||||||        |||||||||||||||||||||||||| | |||    
T  34535926 gttgacaatatggattatggaacttaacttatttagaaaatcagttttaaaactttttttt-------ttgttttattaaactcaatatcatgtcgcgga 34535834  T
Q  318 ataaactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaac 375  Q
    |   ||||| ||||| ||| ||   ||| |||||||| |||||| |||||||||||||    
T  34535833 agggactaacttattccaatatgagtaacgttttggaccaacttaaaacttttaaaac 34535776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 6376375 - 6376479
Alignment:
Q  57 atgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaagttggtcc 155  Q
    ||||||||||  |||||||||||| | |||||||||| |||| ||||| ||||||||||| |||||| | |||||  ||||||| |||| |||||| | |    
T  6376375 atgtttggtcctttatgtttattttaggttttaagttggttctttatgttttaaaagttttaagttggtcccttaggttttaaaagtttcaagttgattc 6376474  T
Q  156 aaaac 160  Q
    |||||    
T  6376475 aaaac 6376479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 17814047 - 17813987
Alignment:
Q  360 ttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||||||||||||||| ||| || ||| |||| ||||||||||||| ||||||||||    
T  17814047 ttgaaacttttaaaacataagagaccaacttgaaacctaaaataaacataagagatcaaac 17813987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 10017997 - 10017938
Alignment:
Q  57 atgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagttt 116  Q
    |||||||||||||||||||||||| | |||||||||| ||   ||||| |||||||||||    
T  10017997 atgtttggtctcttatgtttattttaggttttaagttggtctcttatgttttaaaagttt 10017938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 17813976 - 17814047
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaa 119  Q
    ||||||| |||||||| |||||||||||||||| | |||| ||||| ||   ||||| ||||||||||||||    
T  17813976 cttaattccatgtttgatctcttatgtttattttaggtttcaagttggtctcttatgttttaaaagtttcaa 17814047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 22566303 - 22566378
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttg 123  Q
    ||||||| |||||||| || ||||||||||||| |  |||||| || || | ||||| ||||||||||||||||||    
T  22566303 cttaattgcatgtttgatcccttatgtttattttagtttttaaattggtcccttatgttttaaaagtttcaagttg 22566378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 24185670 - 24185779
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgttttaa 147  Q
    |||||| ||||||||||| ||  ||||||||| | |||| ||||| || | ||||| ||||||||||| || ||| || ||||| ||||||| |||| ||    
T  24185670 ttaattgcatgtttggtcactcgtgtttattttaggtttcaagttggtcctttatgttttaaaagttttaa-ttggtcacttatgttttaaaggtttcaa 24185768  T
Q  148 gttggtccaaa 158  Q
    |||||||||||    
T  24185769 gttggtccaaa 24185779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 43510957 - 43510891
Alignment:
Q  354 atcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||||||   || | ||| |||||| ||||||||||| |||| |||||    
T  43510957 atcaacttgaaacttttaaaacataatgaattaacttaaaacttgaaataaacataagagaccaaac 43510891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 48461867 - 48461805
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaa 418  Q
    |||||| |||||||||||||||||| ||||| ||| |||  ||||| ||||||| ||||||||    
T  48461867 caacttaaaacttttaaaacataaaggatcaacttaaaaactaaaacaaacataagagatcaa 48461805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 48462092 - 48462142
Alignment:
Q  347 gttttggatcaacttgaaacttttaaaacataaaagatcatctttaaactt 397  Q
    ||||||||||||||| |||||||||||||||||| || || ||| ||||||    
T  48462092 gttttggatcaacttaaaacttttaaaacataaatgaccaacttgaaactt 48462142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 10017938 - 10017995
Alignment:
Q  363 aaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||| ||| || ||| |||| ||||||||||||| |||| |||||    
T  10017938 aaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagaccaaac 10017995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 7460646 - 7460582
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||||| |||||||||||||  ||||| ||| |||  ||||||||||||| | ||||||||    
T  7460646 caacttgaaatttttaaaacataagggatcaacttgaaaactaaaataaacataagggatcaaac 7460582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 397
Target Start/End: Complemental strand, 29526986 - 29526658
Alignment:
Q  68 cttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgttttaagttggtccaaaactttgat 166  Q
    ||||||||||||| || ||||||||| || ||||||| ||||||||||| |||||| ||| |||  ||||||| |||| ||||||||||||||| ||  |    
T  29526986 cttatgtttattttaatttttaagttggtccattatgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttact 29526887  T
Q  167 cacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgacttatttacaaaatcagtttaa 266  Q
    ||| |    ||||||||| | ||||  |||| ||| || ||||| ||| | ||||| ||||||| |  ||||| || ||||||||| ||||| |||||||    
T  29526886 cacgttggaataagttagtctcttcagtcacgtaa-cggttaaagatccgggttgacaatatgggtgatggaacttaacttatttagaaaattagtttaa 29526788  T
Q  267 aaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaac 366  Q
    ||   | ||||| ||||  |||||||||||||||||||||||||| |||||||  ||||| ||||| | | |||  ||| |||||||| |||||||||||    
T  29526787 aacgttattttaattttt-ttgttttattaaactcaatatcatgtcgtggaatggactaacttattcctatataagtaacgttttggaccaacttgaaac 29526689  T
Q  367 ttttaaaacataaaagatcatctttaaactt 397  Q
    ||||||||| ||| ||| || ||| ||||||    
T  29526688 ttttaaaacgtaagagaccaacttgaaactt 29526658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 311
Target Start/End: Original strand, 13490174 - 13490437
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgtttta 146  Q
    ||||||| || || || ||||||||||||| || |  |||||||||  | | ||||| ||||||||||| |||||| || ||||  ||||||| ||||||    
T  13490174 cttaattgcaggtctgatctcttatgtttactttagtttttaagttgatcctttatgttttaaaagttttaagttggtctcttacgttttaaaagtttta 13490273  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    |||||||||||||| ||  |||| |    ||||||||| | || |  |||||||| |||||||| |||   ||||| ||||||| |  || || || |||    
T  13490274 agttggtccaaaacgttactcacgttggaataagttagtccctccagtcacttaa-cgtttaaagatccatgttgacaatatgggtgatgaaacttaact 13490372  T
Q  247 tatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgt 311  Q
    |||||| ||||||| ||| ||||||||||||| ||||  ||||||||||||||||||||||||||    
T  13490373 tatttagaaaatcaattttaaaacattttttatttttttttgttttattaaactcaatatcatgt 13490437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 366
Target Start/End: Complemental strand, 6795583 - 6795266
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatccttata-ttttaaatgttttaa 147  Q
    |||||| |||||||| || | ||| ||||||| | |||||||||| || ||||||| ||||||||||| |||||| ||| ||   ||||||| |||| ||    
T  6795583 ttaattgcatgtttgatcccctatatttattttaggttttaagttggtccattatgttttaaaagtttaaagttggtccctaacgttttaaaagtttaaa 6795484  T
Q  148 gttggtccaaaactttgatcacatctata-taagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    |||||| |||||  ||  | |||| |||| |||| ||| |  |||| |||||||| |||| ||| ||  | ||||| |||||||||  |||||||| |||    
T  6795483 gttggttcaaaatgttactaacat-tataataagatagtcctttccgtcacttaaccgttgaaagattcg-gttgacaatatggatgatggaatttaact 6795386  T
Q  247 tatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataat 346  Q
    |||||| ||||||||||| |||||||||||    |||  |||||||||||||||||||||||||| ||| || | || || ||| |||||  |   |||     
T  6795385 tatttagaaaatcagttttaaaacatttttgttatttttttgttttattaaactcaatatcatgtagtgaaagagacaaatttagttcaacgtgagtaac 6795286  T
Q  347 gttttggatcaacttgaaac 366  Q
    ||||||||||||||||||||    
T  6795285 gttttggatcaacttgaaac 6795266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 14473717 - 14473858
Alignment:
Q  235 tggaatttgacttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttc 334  Q
    |||||||| ||||| ||||||||| ||||| ||||||||||||| ||||  ||||||||||||||||||||| |||||| ||||   ||||| ||||| |    
T  14473717 tggaatttaacttacttacaaaattagttttaaaacattttttaattttttttgttttattaaactcaatattatgtggcggaagggactaacttattcc 14473816  T
Q  335 aagatagataatgttttggatcaacttgaaacttttaaaaca 376  Q
    || ||   ||| |||||||| |||||||||||| | ||||||    
T  14473817 aaaatgagtaacgttttggaccaacttgaaactctcaaaaca 14473858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 420
Target Start/End: Complemental strand, 32622415 - 32622229
Alignment:
Q  235 tggaatttgacttatttacaaaatcagtttaaaaacattttt--tacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatt 332  Q
    ||||| || ||||||||| ||||| ||||| |||||||||||  || ||||  ||||||||||||  |||||||||||| | ||||  |||||| |||||    
T  32622415 tggaacttaacttatttaaaaaattagttttaaaacatttttattaattttt-ttgttttattaatttcaatatcatgtcgcggaaggaactaacttatt 32622317  T
Q  333 tcaagatagataatgttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
      ||  ||| ||| |||||||||||||| |||||||||||||||||| ||| || ||| |||  ||||||||||||| | ||||||||    
T  32622316 ctaacgtaggtaacgttttggatcaactggaaacttttaaaacataagagaccaacttgaaaactaaaataaacataagggatcaaac 32622229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 26845591 - 26845513
Alignment:
Q  51 aattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcctt 129  Q
    |||| ||||||||||| ||||||||||||| | |||||||||| || | ||||| |||||||||||||||||| |||||    
T  26845591 aattgcatgtttggtcccttatgtttattttaggttttaagttggtcccttatgttttaaaagtttcaagttggtcctt 26845513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 15988610 - 15988549
Alignment:
Q  100 ttatgctttaaaagtttcaagttgatcc-ttatattttaaatgttttaagttggtccaaaac 160  Q
    ||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  15988610 ttatgttttaaaagtttcaagttggtcccttatattttaaaagttttaagttggtccaaaac 15988549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 27956920 - 27956991
Alignment:
Q  244 acttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaa 318  Q
    ||||||||| |||||||||||||||| |||||| | ||||   | ||||||||||||||||||||||||||||||    
T  27956920 acttatttaaaaaatcagtttaaaaatatttttaattttt---ttttttattaaactcaatatcatgtggtggaa 27956991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 309
Target Start/End: Complemental strand, 44995414 - 44995209
Alignment:
Q  106 tttaaaagtttcaagttgatcc-ttatattttaaatgttttaagttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcg 204  Q
    |||||||||||||||||| ||| |||  ||||||| || | ||||||||||||||| ||  |||| |    ||||||||| | ||||| ||||||||       
T  44995414 tttaaaagtttcaagttggtcccttacgttttaaaagtatcaagttggtccaaaacgttactcacgttggaataagttagtctcttccgtcacttaaa-- 44995317  T
Q  205 tttaaatatctgagttgaaaatatggattctggaatttgacttatttacaaaatcagtttaaaaacattt---tttacttttaattgttttattaaactc 301  Q
    |||||| ||  | ||||| |||||||||  ||||| || ||||||||| ||||||| ||| |||||||||   |||  ||||  ||||||||||||||||    
T  44995316 tttaaagattcgggttgacaatatggatggtggaacttaacttatttaaaaaatcaattttaaaacatttattttttattttttttgttttattaaactc 44995217  T
Q  302 aatatcat 309  Q
    ||||||||    
T  44995216 aatatcat 44995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 397
Target Start/End: Complemental strand, 24015983 - 24015874
Alignment:
Q  288 gttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaacataaaagatcat 387  Q
    |||||||||||||||||||||||| |||||| | ||||| |||||||||  |   |||||||||||| |||| ||||| ||| ||||| |||| || ||     
T  24015983 gttttattaaactcaatatcatgttgtggaagagactaacttatttcaatgtcagtaatgttttggaccaacatgaaattttcaaaacgtaaaggaccaa 24015884  T
Q  388 ctttaaactt 397  Q
    ||| ||||||    
T  24015883 cttaaaactt 24015874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 397
Target Start/End: Original strand, 43513747 - 43513908
Alignment:
Q  236 ggaatttgacttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttca 335  Q
    ||||||| ||||||||| ||||| | |||||||  |||||||   |||  |||||||||||||||||||||||||| ||||||   ||||| ||||||||    
T  43513747 ggaatttaacttatttaaaaaattattttaaaataatttttttgatttttttgttttattaaactcaatatcatgtcgtggaagtgactaacttatttca 43513846  T
Q  336 agatagataatgttttggatcaacttgaaacttttaaaacataaaagatcatctttaaactt 397  Q
    |  |  ||||  ||||| | ||||||||||   ||||||| |||  ||||| ||||||||||    
T  43513847 acgtgaataacattttgaaccaacttgaaaacattaaaacgtaagggatcaactttaaactt 43513908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 1353132 - 1353192
Alignment:
Q  348 ttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacat 408  Q
    ||||||| |||||||||||||||||||||||| ||| || ||| |||| ||||||||||||    
T  1353132 ttttggaccaacttgaaacttttaaaacataagagaccaacttaaaacctaaaataaacat 1353192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 1353206 - 1353140
Alignment:
Q  57 atgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttg 123  Q
    ||||||||||||| |||||||||| | |||||||||| ||   ||||| ||||||||||||||||||    
T  1353206 atgtttggtctctcatgtttattttaggttttaagttggtctcttatgttttaaaagtttcaagttg 1353140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 14473506 - 14473580
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagtt 122  Q
    ||||||| ||||||||||| ||| ||||||||| ||||||| |||| || | ||||| ||||||||||| |||||    
T  14473506 cttaattgcatgtttggtcgcttttgtttattttaagttttgagttggtcccttatgttttaaaagttttaagtt 14473580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 13140365 - 13140312
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    |||||| ||||||||||||||||||||| || ||| |||| |||||||||||||    
T  13140365 caacttaaaacttttaaaacataaaagaccaacttaaaacctaaaataaacata 13140312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 6412465 - 6412580
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagtt-gatccttatattttaaatgtttta 146  Q
    ||||||| |||||  |||||||||||||||||||| |||||||||| |  | |||   ||||||||||| || || || |||||| ||||||  |||| |    
T  6412465 cttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggaccttta-catttaaaagttttaaattggacccttatgttttaagagtttca 6412563  T
Q  147 agttggtccaaaacttt 163  Q
    |||||||||||||||||    
T  6412564 agttggtccaaaacttt 6412580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 38262873 - 38262933
Alignment:
Q  360 ttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||| |||||||| |||| | ||| |||||||||||||||||| |||| |||||    
T  38262873 ttgaaacttttgaaacataagagattagcttgaaacttaaaataaacatatgagaccaaac 38262933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 24065991 - 24065952
Alignment:
Q  343 taatgttttggatcaacttgaaacttttaaaacataaaag 382  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  24065991 taatgttttagaccaacttgaaacttttaaaacataaaag 24065952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 24284013 - 24283882
Alignment:
Q  246 ttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataa 345  Q
    ||||||| ||||||| ||| |||| |||||| |  ||| |||||||||||||||| |||||||||| ||  || | ||||| |||||| || ||    ||    
T  24284013 ttatttagaaaatcaattttaaaatatttttaatattttattgttttattaaacttaatatcatgtcgttaaagagactaacttattttaacatgagcaa 24283914  T
Q  346 tgttttggatcaacttgaaacttttaaaacat 377  Q
     ||||||||  ||||||||||||| |||||||    
T  24283913 cgttttggacaaacttgaaactttgaaaacat 24283882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 13140310 - 13140400
Alignment:
Q  68 cttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgttttaagttggtccaa 157  Q
    ||||||||||||| | |||||||||| ||   ||||| ||||||||||| |||||| || ||||  ||||||| |||| ||||||||||||    
T  13140310 cttatgtttattttaggttttaagttggtcttttatgttttaaaagttttaagttggtcacttacgttttaaaggtttcaagttggtccaa 13140400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 24284073 - 24284131
Alignment:
Q  321 aactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaacataa 379  Q
    |||||| |||||| |||||   ||||||||||| |||||||||||||||||||| ||||    
T  24284073 aactaacttattttaagatgagtaatgttttgggtcaacttgaaacttttaaaatataa 24284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 38262935 - 38262841
Alignment:
Q  57 atgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgttttaagtt 150  Q
    |||||||||||| ||||||||||| |||||| ||| || |   ||||| || ||||||||||| ||  || ||||||||||||| ||||||||||    
T  38262935 atgtttggtctcatatgtttattttaagtttcaagctaatctcttatgtttcaaaagtttcaaattagtctcttatattttaaaagttttaagtt 38262841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 13490249 - 13490188
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatca 417  Q
    |||||| |||||||||||||||||| ||||| ||| |||  |||| |||||||| |||||||    
T  13490249 caacttaaaacttttaaaacataaaggatcaacttaaaaactaaagtaaacataagagatca 13490188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 26845519 - 26845572
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    ||||||||||||||||||||||||  || || ||| |||| |||||||||||||    
T  26845519 caacttgaaacttttaaaacataagggaccaacttaaaacctaaaataaacata 26845572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 6795509 - 6795573
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||| |||||||||||||||||  || || ||| |||| ||||||||| ||||| ||||||||    
T  6795509 caactttaaacttttaaaacataatggaccaacttaaaacctaaaataaatataggggatcaaac 6795573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 27956842 - 27956810
Alignment:
Q  343 taatgttttggatcaacttgaaacttttaaaac 375  Q
    |||||||||||| ||||||||||||||||||||    
T  27956842 taatgttttggaccaacttgaaacttttaaaac 27956810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 365
Target Start/End: Complemental strand, 48171851 - 48171529
Alignment:
Q  46 gacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttt 144  Q
    ||||||||| ||||||||||| ||||||||||||| | |||| ||||| || | ||||| ||||||||||||||| || | |||||| ||||||| ||||    
T  48171851 gacttaattgcatgtttggtcccttatgtttattttaggtttcaagttggtcctttatgttttaaaagtttcaagctgttcccttatgttttaaaagttt 48171752  T
Q  145 taagttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttga 244  Q
     |||||||| |||||| ||  |||||| |  ||||||||| | ||||| |||||  | ||| |||| || |  ||| | ||| ||| |  |||||||| |    
T  48171751 caagttggttcaaaacgttactcacatttgaataagttagtcccttccgtcactagaccgtataaagatttaggttaacaatgtgggtgatggaatttaa 48171652  T
Q  245 cttatttacaaaatcagtttaaaaacattttttact--tttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagataga 342  Q
    |||||||| ||||||||||| ||||||||||||  |  |||  |||||||||||||||||||||||||| | |||||  ||||| ||||| |||  |       
T  48171651 cttatttagaaaatcagttttaaaacatttttttttaatttttttgttttattaaactcaatatcatgtcgcggaatggactaacttattccaacgtgag 48171552  T
Q  343 taatgttttggatcaacttgaaa 365  Q
    ||| ||||||||| |||||||||    
T  48171551 taacgttttggattaacttgaaa 48171529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 311
Target Start/End: Complemental strand, 35795732 - 35795462
Alignment:
Q  45 tgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtt 143  Q
    |||||||||| |||||||||||  |||||||||||| |  ||||||||| || | | ||| ||||||||||| || ||| | |||||| ||||||| |||    
T  35795732 tgacttaattgcatgtttggtcctttatgtttattttagattttaagttggtccctgatgttttaaaagttttaaattggtcccttatgttttaaaagtt 35795633  T
Q  144 ttaagttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttg 243  Q
    | |||||||| |||||| ||  ||||||    ||||||||| | ||||||||||||  | ||||||| ||  ||||||| || |||  |  || |||||     
T  35795632 tcaagttggttcaaaacgttactcacataagaataagttagtctcttccatcacttggttgtttaaagattcgagttgacaacatgagtgatgaaattta 35795533  T
Q  244 acttatttacaaaatcagtttaaaaacatttttta---cttttaattgttttattaaactcaatatcatgt 311  Q
    ||||||||| ||||| ||||| ||| |||||||||    ||||  ||||||||||||||||||||||||||    
T  35795532 acttatttagaaaataagttttaaaccattttttaatttttttttttgttttattaaactcaatatcatgt 35795462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 375
Target Start/End: Original strand, 142809 - 143141
Alignment:
Q  46 gacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgttt 144  Q
    ||||||||| ||||||| ||| ||||||| ||||| | |||||||||| || | || || ||||||| |||||||||| ||| |||| ||||||| ||||    
T  142809 gacttaattgcatgttttgtcccttatgtgtattttaggttttaagttggtcccttgtgttttaaaattttcaagttggtcccttatgttttaaaagttt 142908  T
Q  145 taagttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttga 244  Q
     || || ||  ||||| ||  | ||||     |||||||| | |||| ||||||| |  ||||||| ||  | |||||||||||||||  || ||||| |    
T  142909 caaatttgtttaaaacgttacttacattggagtaagttagtcccttctatcacttgactgtttaaagattcgggttgaaaatatggatgatgaaatttaa 143008  T
Q  245 cttatttacaaaatcagtttaaaaacatttttta--cttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagataga 342  Q
    |||||||| ||||||||||| |||||||||||||   ||||  ||| ||||||||| |||||||| |||    ||| | ||||| ||||| |||  |       
T  143009 cttatttagaaaatcagttttaaaacattttttaattttttttttgctttattaaagtcaatatcgtgtcacagaagagactaacttattgcaacgtgag 143108  T
Q  343 taatgttttggatcaacttgaaacttttaaaac 375  Q
    ||| |||||||| ||||||||||||||||||||    
T  143109 taacgttttggaccaacttgaaacttttaaaac 143141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 311
Target Start/End: Complemental strand, 36783481 - 36783224
Alignment:
Q  57 atgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatccttatattttaaat----gttttaagttgg 152  Q
    ||||||||||||||||||| |||| |  ||||||||| ||   ||||| ||||||| ||||||||||| | |||| |||||||     ||||||| ||||    
T  36783481 atgtttggtctcttatgttcattttagattttaagttggtcttttatgttttaaaaatttcaagttgacctttatgttttaaaattaagttttaatttgg 36783382  T
Q  153 tccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgacttattta 252  Q
    | |||||| ||| ||||||    ||||||||| | || ||||||||||| |||||||| || | |||||| ||||||| |  |||||||| | |||||||    
T  36783381 ttcaaaacgttgctcacattgtaataagttagtccct-ccatcacttaaccgtttaaagat-tcagttgagaatatgggtgatggaatttaatttattta 36783284  T
Q  253 caaaatcagtttaaaaacattttttactt-ttaattgttttattaaactcaatatcatgt 311  Q
     | ||||||||| |||| || ||||| || ||  ||  ||||||||||||||||||||||    
T  36783283 gataatcagttttaaaatatattttatttatttttttctttattaaactcaatatcatgt 36783224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 37245637 - 37245750
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| ||| |||| || ||||||||||||| |  ||||||||| ||   ||||  |||||||||||||||||||||| ||| |||||||| ||||||    
T  37245637 cttaattgcatatttgatcccttatgtttattttagtttttaagttggtctcttatattttaaaagtttcaagttgatcccttacattttaaaagtttta 37245736  T
Q  147 agttggtccaaaac 160  Q
    ||||||||||||||    
T  37245737 agttggtccaaaac 37245750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 14420195 - 14420079
Alignment:
Q  45 tgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgtt 143  Q
    |||||||||| |||||||| |  ||||||||||||| | ||||||| |||||  |||||| ||||||||||||||||| |||  |||| |||||||  ||    
T  14420195 tgacttaattgcatgtttgattccttatgtttattttaggttttaaattagtctattatgttttaaaagtttcaagttaatcaattatgttttaaagatt 14420096  T
Q  144 ttaagttggtccaaaac 160  Q
    | |||||||||||||||    
T  14420095 tcaagttggtccaaaac 14420079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 48 - 374
Target Start/End: Original strand, 19987334 - 19987660
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||||||| || | ||||||||||| |  |||||||||  | | ||||| ||||||||||| |||||| ||| |||  ||||||| |||| |    
T  19987334 cttaattgcatgtttgatcccatatgtttattttagtttttaagttgttcctttatgttttaaaagttttaagttggtcccttaagttttaaaagtttca 19987433  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    ||||| |||||||| ||  ||||||    ||||||||| | ||||  ||| |||| |||||||| ||  | || ||  |||||| |  || ||||| |||    
T  19987434 agttgatccaaaacgttactcacattggaataagttagtcccttcagtcatttaa-cgtttaaagattcgggtcgactatatgggtgatgaaatttaact 19987532  T
Q  247 tatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataat 346  Q
    |||||| ||||||| ||| ||    ||||| | ||||  ||||||||||||| |||||||||||| |||||| | | ||| ||||| |||  ||  |||     
T  19987533 tatttagaaaatcaattttaatttttttttaatttttttttgttttattaaattcaatatcatgtcgtggaagagattaacttattacaatgtaagtaac 19987632  T
Q  347 gttttggatcaacttgaaacttttaaaa 374  Q
    ||||||||||||||| ||||||||||||    
T  19987633 gttttggatcaacttaaaacttttaaaa 19987660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 143226 - 143113
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    |||||||  ||||||| || ||||||||||||| | |||||||||| || |  |||||||||||||||| |||||| | |||||  ||||||| |||| |    
T  143226 cttaattgtatgtttgatcccttatgtttattttaggttttaagttggtcctatatgctttaaaagttttaagttggtcccttacgttttaaaagtttca 143127  T
Q  147 agttggtccaaaac 160  Q
    ||||||||||||||    
T  143126 agttggtccaaaac 143113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 309
Target Start/End: Original strand, 3072979 - 3073240
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgttttaa 147  Q
    |||||| |||||||| ||  |||||||||||| |  ||||||||| || | || || ||||||||||| |||||| || ||||  ||||||| |||| ||    
T  3072979 ttaattgcatgtttgatcctttatgtttattttagattttaagttggtcccttgtgttttaaaagttttaagttggtctcttacgttttaaaagtttcaa 3073078  T
Q  148 gttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgactt 247  Q
    ||||||| ||||  ||  |||| |    ||||||||| | |||| |||||||||   |||||| || |||||| | ||||||| |   |||| || ||||    
T  3073079 gttggtctaaaatgttattcacgttggaataagttagtcccttcaatcacttaacgttttaaaaatttgagttaacaatatgggtggcggaacttaactt 3073178  T
Q  248 atttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcat 309  Q
    ||||| |||| |||||| ||||||||||||   |||  ||||||||||||||| ||||||||    
T  3073179 atttagaaaaccagttttaaaacatttttttaatttttttgttttattaaacttaatatcat 3073240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 305
Target Start/End: Original strand, 33459895 - 33460148
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||| ||| || ||||||||||||| |  ||| |||||||| | ||||| |||||||||||||||||| ||| |||  ||||||| |||| |    
T  33459895 cttaattgcatgcttgatcccttatgtttattttagttttcaagttagtcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttca 33459994  T
Q  147 agttggtccaaaactttgatcacatctat-ataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgac 245  Q
    |||||||||||||  ||   ||| | ||| |||| |||| | ||||| |||||||| |||||||| || ||  |||| ||||||| |  | ||| || ||    
T  33459995 agttggtccaaaatgttacgcacgt-tataataaattagtcccttccgtcacttaa-cgtttaaagatttggattgacaatatgggtgatagaacttaac 33460092  T
Q  246 ttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaata 305  Q
    ||||||| ||||||||||||||| |   ||||| |||| ||| |||||||||||||||||    
T  33460093 ttatttagaaaatcagtttaaaacc---ttttattttttatt-ttttattaaactcaata 33460148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 6043448 - 6043557
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| ||||||||||| ||||| ||||||| | |||||||||   | ||||||  |||||| ||||||||||  ||| ||||||||||| |||||||    
T  6043448 cttaattgcatgtttggtcccttatatttattttaggttttaagt---tccattatattttaaatgtttcaagtttgtccattatattttaattgtttta 6043544  T
Q  147 agttggtccaaaa 159  Q
    ||||| |||||||    
T  6043545 agttgatccaaaa 6043557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 33460297 - 33460219
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc 127  Q
    |||||| |||||||| |||||||||||||||| |  ||| ||||| || | ||||| ||||||||||||||||||||||    
T  33460297 ttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatcc 33460219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 33460219 - 33460287
Alignment:
Q  352 ggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||||||||  || || ||| |||  ||||||||||||| ||||||||||    
T  33460219 ggatcaacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagagatcaaac 33460287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 22792288 - 22792387
Alignment:
Q  46 gacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgttt 144  Q
    ||||||||| ||| ||||||| | ||||||||||| |||||||||||| || | || || ||||||||||| |||||| ||| |||| ||||||| ||||    
T  22792288 gacttaattgcatatttggtcccatatgtttattttaagttttaagttggtcccttttgttttaaaagttttaagttggtccgttatgttttaaaagttt 22792387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 30972073 - 30971999
Alignment:
Q  238 aatttgacttatttacaaaatcagtttaaaaacatttttt-acttttaattgttttattaaactcaatatcatgt 311  Q
    ||||| ||||||||| ||||| | ||| |||||||||||| | ||||  ||||||||||||||||||||||||||    
T  30972073 aatttaacttatttagaaaattaattttaaaacatttttttaattttttttgttttattaaactcaatatcatgt 30971999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 48171439 - 48171517
Alignment:
Q  45 tgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttg 123  Q
    |||||||||| |||||||| || ||||||||||||| | |||| | ||| || | ||||| ||||||||||||||||||    
T  48171439 tgacttaattgcatgtttgatcccttatgtttattttaggtttcaggttggtcccttatgttttaaaagtttcaagttg 48171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 8718609 - 8718496
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaag-ttgatccttatattttaaatgtttta 146  Q
    ||||||| |||||||| || | ||||||||||| | |||||||||| || | ||||  ||||||||||||||| |||  |||||| |||||||  ||| |    
T  8718609 cttaattgcatgtttgatcccatatgtttattttaggttttaagttggtcccttattttttaaaagtttcaagtttgtcccttatgttttaaaattttca 8718510  T
Q  147 agttggtccaaaac 160  Q
    ||||||| ||||||    
T  8718509 agttggttcaaaac 8718496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 18519618 - 18519691
Alignment:
Q  347 gttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||| ||||||||||||||||||||||| ||  ||| || ||| |||  ||||||||||||| ||||||||||    
T  18519618 gttttagatcaacttgaaacttttaaaacgtatgagaccaacttgaaaactaaaataaacataagagatcaaac 18519691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 420
Target Start/End: Complemental strand, 31872792 - 31872719
Alignment:
Q  347 gttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||| |||||||||||||||||||| |||  || || |||||||  ||||||||||||| | ||||||||    
T  31872792 gttttggaccaacttgaaacttttaaaacgtaagggaccaactttaaaactaaaataaacataagggatcaaac 31872719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 42604630 - 42604743
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatccttata-ttttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  ||| ||||| || | ||||  |||||||||||||||||| ||| | || ||||||| |||| |    
T  42604630 cttaattgcatgtttgatcccttatgtttattttagttttcaagttggtactttatattttaaaagtttcaagttggtccctttagttttaaaagtttca 42604729  T
Q  147 agttggtccaaaac 160  Q
    |||||||| |||||    
T  42604730 agttggtctaaaac 42604743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 34517965 - 34518077
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaa 147  Q
    |||||| |||||||| || ||||||||||||| |  ||||||||| || ||||||| ||||| |||||||| | | | || ||  ||||||| |||||||    
T  34517965 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccattatgttttaacagtttcaactcggtcccctacgttttaaaagttttaa 34518064  T
Q  148 gttggtccaaaac 160  Q
    |||||| ||||||    
T  34518065 gttggttcaaaac 34518077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 37245824 - 37245915
Alignment:
Q  244 acttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaa 336  Q
    ||||||||| |||||||||||  |||||||||||| ||||  || |||||||||||||  |||||||| | ||||   |||||||||||||||    
T  37245824 acttatttagaaaatcagtttttaaacattttttaatttt-ttttttttattaaactcgttatcatgtcgcggaaatgactaaattatttcaa 37245915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 31873017 - 31872899
Alignment:
Q  42 atatgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaat 140  Q
    ||||| ||||||| ||| |||| || ||||||||||||| |  ||| ||||| | ||  |||| |||||||||||||||||| | |||||  |||||||     
T  31873017 atatggcttaattgcatatttgatcccttatgtttattttagttttcaagtt-ggtccctatgttttaaaagtttcaagttggtcccttacgttttaaaa 31872919  T
Q  141 gttttaagttggtccaaaac 160  Q
    |||| |||||||||||||||    
T  31872918 gtttcaagttggtccaaaac 31872899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 37245716 - 37245649
Alignment:
Q  352 ggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaa 419  Q
    ||||||||||||||||||||||| |||| ||| || ||| |||  ||||||||||||| | |||||||    
T  37245716 ggatcaacttgaaacttttaaaatataagagaccaacttaaaaactaaaataaacataagggatcaaa 37245649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 48171777 - 48171827
Alignment:
Q  359 cttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    |||||||||||||||||||||| || || ||| |||| |||||||||||||    
T  48171777 cttgaaacttttaaaacataaaggaccaacttgaaacctaaaataaacata 48171827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 8718407 - 8718452
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagtt 93  Q
    ||||||| ||||||||||||||| ||||||||| | ||||||||||    
T  8718407 cttaattgcatgtttggtctcttgtgtttattttaggttttaagtt 8718452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 18519491 - 18519402
Alignment:
Q  286 ttgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaac 375  Q
    |||||||||||||||||||||||||| | ||||   ||||| |||||||||  |   ||| |||||  |||||||||||| |||||||||    
T  18519491 ttgttttattaaactcaatatcatgttgcggaagggactaacttatttcaaagtgagtaacgttttatatcaacttgaaatttttaaaac 18519402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 35795313 - 35795426
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||||| |||||||||||||||| |  ||| ||||| || | ||  | |||||||||||| ||||| | |||||  ||||||| |||| |    
T  35795313 cttaattgcatgtttgatctcttatgtttattttagatttcaagttggtcccttgagttttaaaagtttcgagttggtcccttacgttttaaaggtttca 35795412  T
Q  147 agttggtccaaaac 160  Q
    || |||||||||||    
T  35795413 aggtggtccaaaac 35795426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 36783414 - 36783479
Alignment:
Q  355 tcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||| ||||||||||||||||| || ||| |||  |||||| |||||| |||| |||||    
T  36783414 tcaacttgaaatttttaaaacataaaagaccaacttaaaatctaaaatgaacataagagaccaaac 36783479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 19987409 - 19987345
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||| |||||||||||||||||| || || ||| |||  ||||||||||||| | ||||||||    
T  19987409 caacttaaaacttttaaaacataaaggaacaacttaaaaactaaaataaacatatgggatcaaac 19987345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 375
Target Start/End: Complemental strand, 19987447 - 19987419
Alignment:
Q  347 gttttggatcaacttgaaacttttaaaac 375  Q
    |||||||||||||||||||||||||||||    
T  19987447 gttttggatcaacttgaaacttttaaaac 19987419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 22792681 - 22792577
Alignment:
Q  57 atgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaagttggtcc 155  Q
    |||||||||| | ||||||||||| | |||||||||| || | ||| | ||||||||||| |||||| | |||||  ||| ||| |||| ||||| ||||    
T  22792681 atgtttggtcccatatgtttattttaggttttaagttggtcccttaagttttaaaagttttaagttggtcccttacgtttgaaaggtttcaagttagtcc 22792582  T
Q  156 aaaac 160  Q
    |||||    
T  22792581 aaaac 22792577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 48171517 - 48171453
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||||  || || | | |||| ||||||||||||| | ||||||||    
T  48171517 caacttgaaacttttaaaacataagggaccaacctgaaacctaaaataaacataagggatcaaac 48171453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 48 - 375
Target Start/End: Original strand, 45505059 - 45505387
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  ||||||||| |||  | ||| ||||||||||||| |||| | |||||  ||||||| |||| |    
T  45505059 cttaattgcatgtttgatcccttatgtttattttagtttttaagttggttactaatgttttaaaagtttcatgttggttccttacgttttaaaagtttca 45505158  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    ||||||||||||||  |  |||| |    |||| |||| | |||| ||||||||| |||||||| ||    ||||| ||||||| |  ||||| || | |    
T  45505159 agttggtccaaaacgctactcacgttggaataaattagtcccttcaatcacttaa-cgtttaaagattcaggttgacaatatgggtgatggaacttaatt 45505257  T
Q  247 tatttacaaaatcagtttaaaaacatttttt-acttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataa 345  Q
    |||||| ||||||||||| |||||||||||| | ||||  |||||||||||||||||||||||||| |||||| | ||||| |||||  ||  |   |||    
T  45505258 tatttagaaaatcagttttaaaacatttttttaattttttttgttttattaaactcaatatcatgtcgtggaagagactaacttattctaatgtgagtaa 45505357  T
Q  346 tgttttggatcaacttgaaacttttaaaac 375  Q
     |||||||| ||||||||||||||||||||    
T  45505358 cgttttggaccaacttgaaacttttaaaac 45505387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 420
Target Start/End: Original strand, 37724439 - 37724797
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| ||||| || |||||||||||||||| |  |||||| || || | | ||| |||||||||||||||||| ||| ||| ||||||||  ||| |    
T  37724439 cttaattgcatgtatgatctcttatgtttattttagtttttaaattggtccttcatgatttaaaagtttcaagttggtcccttacattttaaaattttca 37724538  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    | |||||||||||| ||  |||  |    ||||||||| | ||||| ||||||||   |||||| |||   ||||| |||||||||  ||||| || |||    
T  37724539 aattggtccaaaacgttactcatgttggaataagttagtctcttccgtcacttaaa--tttaaagatccaggttgacaatatggatgatggaacttaact 37724636  T
Q  247 tatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataat 346  Q
    |||||| ||||||| ||| ||||||||||||             |||||||||||||||||||||  ||||| | ||||| ||||| |||  |   |||     
T  37724637 tatttaaaaaatcaattttaaaacatttttt-------------ttattaaactcaatatcatgtcatggaagagactaacttattccaacgtgagtaac 37724723  T
Q  347 gttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||| |||||||||||||||||||| |||  ||||| ||| |||  ||||||||||||| ||||||||||    
T  37724724 gttttggaccaacttgaaacttttaaaacctaagggatcaacttaaaaactaaaataaacataagagatcaaac 37724797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 4416889 - 4416777
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaa 147  Q
    |||||| |||||||| |||||||||||||||| |  ||||||||| || | ||||| ||||||| ||| |||||| | ||||| |||||||| |||||||    
T  4416889 ttaattgcatgtttgatctcttatgtttattttagtttttaagttggtcccttatgttttaaaaattttaagttggtcccttacattttaaaagttttaa 4416790  T
Q  148 gttggtccaaaac 160  Q
    |||||||||||||    
T  4416789 gttggtccaaaac 4416777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 383
Target Start/End: Complemental strand, 43913610 - 43913471
Alignment:
Q  244 acttatttacaaaatcagtttaaaaacatttttt-acttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagataga 342  Q
    ||||||||| ||||||||||| |||||||||||| | ||||  |||||||||||||||||||||||||| |||||||   |||| | |||  ||  |       
T  43913610 acttatttagaaaatcagttttaaaacatttttttaattttttttgttttattaaactcaatatcatgtcgtggaat-ggctaactgattctaatgtgag 43913512  T
Q  343 taatgttttggatcaacttgaaacttttaaaacataaaaga 383  Q
    ||| ||||||||||||||||||||||||||||| |||||||    
T  43913511 taacgttttggatcaacttgaaacttttaaaacgtaaaaga 43913471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 311
Target Start/End: Complemental strand, 11306666 - 11306402
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  ||| ||||| || | ||||| |||||||||||||||||| | |||||  ||||||| |||| |    
T  11306666 cttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttca 11306567  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaa-tttgac 245  Q
    |||||||||||||| ||  |||| |    ||||||||| | ||||  ||||||||| ||||| | || || ||||| ||||||| |  | |||  || ||    
T  11306566 agttggtccaaaacgttactcactttggaataagttagtcccttctgtcacttaat-gtttatagatttgggttgacaatatgggtgatagaaccttaac 11306468  T
Q  246 ttatttacaaaatcagtttaaaaacat-tttttacttttaattgttttattaaactcaatatcatgt 311  Q
    ||||||| ||||||||||| ||||||| |||||| | ||  | ||||||||||||||||||||||||    
T  11306467 ttatttagaaaatcagttt-aaaacatatttttaatgtttttggttttattaaactcaatatcatgt 11306402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 311
Target Start/End: Original strand, 20268952 - 20269128
Alignment:
Q  133 ttttaaatgttttaagttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggat 232  Q
    ||||||| |||| |||||||| |||||| ||  ||||||  | ||||||||| | ||||||| ||||  ||||||||| ||| | ||||| ||||||  |    
T  20268952 ttttaaaagtttcaagttggttcaaaacgttactcacattgaaataagttagtctcttccataacttg-tcgtttaaagatccgggttgacaatatgagt 20269050  T
Q  233 tctggaatttgacttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgt 311  Q
      || ||||| ||||||||||||||||||||| ||||||||||||  ||||  |||||||||||||| |||||| ||||    
T  20269051 gatgaaatttaacttatttacaaaatcagttttaaaacatttttttatttt-tttgttttattaaacacaatattatgt 20269128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 17524616 - 17524503
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||||| ||||||| |||||||| |  ||| ||||| || | ||||  |||||||||||||||||||| |||||| ||||||| ||||||    
T  17524616 cttaattgcatgtttgatctcttacgtttattttagttttcaagttggtactttattttttaaaagtttcaagttgatcccttatgttttaaaagtttta 17524517  T
Q  147 agttggtccaaaac 160  Q
    |||||| |||||||    
T  17524516 agttggaccaaaac 17524503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 45505476 - 45505359
Alignment:
Q  44 atgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgt 142  Q
    ||||||||||| |||||||| || ||||||||||||| |  ||| ||||| || | ||||| |||||||||||||||||| | |||||  ||||||| ||    
T  45505476 atgacttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagt 45505377  T
Q  143 tttaagttggtccaaaac 160  Q
    || |||||||||||||||    
T  45505376 ttcaagttggtccaaaac 45505359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 375
Target Start/End: Complemental strand, 46397528 - 46397391
Alignment:
Q  238 aatttgacttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaag 337  Q
    ||||| ||||||||| ||||||| ||| |||||| |||| | | ||  |||||||||||||||||||||||||| || |||| |||||| |||||| ||     
T  46397528 aatttaacttatttagaaaatcaattttaaaacaattttcaatattttttgttttattaaactcaatatcatgtcgttgaatgaactaatttatttgaac 46397429  T
Q  338 atagataatgttttggatcaacttgaaacttttaaaac 375  Q
     |   ||| |||||||| |||||| |||||||||||||    
T  46397428 gtgagtaacgttttggaccaacttaaaacttttaaaac 46397391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 49984211 - 49984098
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| | |||| | ||| |||| ||||| |||||||||||||||||| | |||||| |||||||  ||| |    
T  49984211 cttaattgcatgtttgatcccttatgtttattttaggtttcatgttggttccttatgttttaaaagtttcaagttggtcccttatgttttaaagttttca 49984112  T
Q  147 agttggtccaaaac 160  Q
    ||||||||||||||    
T  49984111 agttggtccaaaac 49984098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 374
Target Start/End: Original strand, 4416476 - 4416804
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcctt-atattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||  ||||||| |  |||||||||  | | ||||| |||||||||||||||||| ||||| |  ||||||| |||| |    
T  4416476 cttaattgcatgtttgatcccttacatttattttagtttttaagttgatcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttca 4416575  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    |||||||||||||| ||  |||| |    ||||||||| | ||||  ||||||||| |||| || ||  | ||| | ||||||| |  || || || |||    
T  4416576 agttggtccaaaacgttactcacgttggaataagttagtcccttcagtcacttaat-gtttgaagattcg-gtttacaatatgggtgatgaaacttaact 4416673  T
Q  247 tatttacaaaatcagtttaaaaacatttttt---acttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagat 343  Q
    |||||| ||||||| ||| ||||||||||||   | ||||  |||||||||||||||||||||||||| ||||||   ||||| ||||| |||  |   |    
T  4416674 tatttagaaaatcaatttgaaaacattttttttaatttttttttgttttattaaactcaatatcatgtcgtggaagggactaacttattccaatgtgagt 4416773  T
Q  344 aatgttttggatcaacttgaaacttttaaaa 374  Q
    || |||||||| |||||| ||||||||||||    
T  4416774 aacgttttggaccaacttaaaacttttaaaa 4416804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 336
Target Start/End: Complemental strand, 48846130 - 48845836
Alignment:
Q  44 atgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgt 142  Q
    ||||||||||| |||||||| || ||||||||||||| |  ||||||||| || | ||||| ||||||||||| ||| || | |||||| ||||||| ||    
T  48846130 atgacttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgttttaaaagttttaagatggtgccttatgttttaaaagt 48846031  T
Q  143 tttaagttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaattt 242  Q
    || ||||||| | ||||| ||  |||| |    |||| |||| | ||||  |||||||| || ||||| ||  | ||||| ||||||| |  || || ||    
T  48846030 ttcaagttggactaaaacgttactcacgttggaataaattagtctcttcagtcacttaa-cgattaaagattcgggttgagaatatgggtgatgaaactt 48845932  T
Q  243 gacttatttacaaaatcagtttaaaaacatttttt--acttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaa 336  Q
     ||||||||| |||| || ||| ||||||||||||  | ||||  |||||||||||||||||||||||||| |  ||| | ||||| |||||||||    
T  48845931 aacttatttaaaaaaccaattttaaaacatttttttaatttttttttgttttattaaactcaatatcatgtcgcagaaaagactaacttatttcaa 48845836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 374
Target Start/End: Original strand, 12293093 - 12293224
Alignment:
Q  244 acttatttacaaaatcagtttaaaaacat-tttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagataga 342  Q
    ||||||||| ||||||| ||| |||| || |||||| |||| ||||||||||||||||||| || ||||||||||| | ||||| |||||  |  ||       
T  12293093 acttatttataaaatcaattttaaaatatatttttattttttattgttttattaaactcaagattatgtggtggaagagactaatttattcaactatgag 12293192  T
Q  343 taatgttttggatcaacttgaaacttttaaaa 374  Q
    |||||||||||| |||| ||||||||||||||    
T  12293193 taatgttttggaccaacatgaaacttttaaaa 12293224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 277
Target Start/End: Original strand, 49983793 - 49984023
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| ||||||||||| ||| || |||||| |  ||| ||||| || | ||||| ||||||||||| |||||| | |||||| |||||||  |||||    
T  49983793 cttaattgcatgtttggtcccttgtgcttattttagatttcaagttggtcctttatgttttaaaagtttgaagttggtcccttatgttttaaaaatttta 49983892  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    ||||||| |||||| ||  |||||| |  ||||||||| |  |||| |||||| |||| | ||| || || ||||| ||| ||  |  |||||||| |||    
T  49983893 agttggttcaaaacgttactcacatttgaataagttagtccattccgtcacttgatcggtcaaagatttgggttgacaatgtgagtggtggaatttaact 49983992  T
Q  247 tatttacaaaatcagtttaaaaacatttttt 277  Q
    |||||| ||||| ||||| ||| ||||||||    
T  49983993 tatttagaaaattagttttaaatcatttttt 49984023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 17524204 - 17524317
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  ||| ||||| || | ||||| ||||||||||||||||||||| ||||| ||||||| |||| |    
T  17524204 cttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatctcttatgttttaaaagtttca 17524303  T
Q  147 agttggtccaaaac 160  Q
    | ||| ||||||||    
T  17524304 aattgatccaaaac 17524317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 48845707 - 48845824
Alignment:
Q  43 tatgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatg 141  Q
    |||| ||||||| |||||||| |||||||||||||||| |  || |||||| |  | ||||| |||||||||||||||||| | |||||  |||||||      
T  48845707 tatggcttaattgcatgtttgatctcttatgtttattttagtttataagttggccccttatgttttaaaagtttcaagttggtcccttacgttttaaaaa 48845806  T
Q  142 ttttaagttggtccaaaa 159  Q
    ||||||||||||||||||    
T  48845807 ttttaagttggtccaaaa 48845824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 4592765 - 4592655
Alignment:
Q  51 aattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaagt 149  Q
    |||| ||||||||||| ||||||||||||| | |||||||||| ||   ||||| ||||||||||| |||||| | |||||| ||||||  |||| ||||    
T  4592765 aattgcatgtttggtcccttatgtttattttaggttttaagttggtctcttatgttttaaaagttttaagttggtcccttatgttttaacagtttcaagt 4592666  T
Q  150 tggtccaaaac 160  Q
    |||| ||||||    
T  4592665 tggttcaaaac 4592655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 380
Target Start/End: Complemental strand, 52485548 - 52485422
Alignment:
Q  254 aaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatgttttgg 353  Q
    ||||||||||| ||||||||||||   |||  |||||||||||||||||||||||||| | |||| | | ||| |||||||||  |   |||||||||||    
T  52485548 aaaatcagttttaaaacatttttttagtttttttgttttattaaactcaatatcatgtcgcggaagagattaacttatttcaatgtcagtaatgttttgg 52485449  T
Q  354 atcaacttgaaacttttaaaacataaa 380  Q
    |  ||| ||||||||| ||||| ||||    
T  52485448 actaacatgaaactttgaaaacgtaaa 52485422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 18414742 - 18414835
Alignment:
Q  68 cttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaagttggtccaaaac 160  Q
    ||||||||||||| || ||||||||| || | ||||| |||||||||||||||||| | ||||| ||||||||  ||| |||||||| ||||||    
T  18414742 cttatgtttattttaatttttaagttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaaatttcaagttggttcaaaac 18414835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 17524374 - 17524267
Alignment:
Q  290 tttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaacataaaagatcatct 389  Q
    |||||||||||||||||||||| |   |||  ||||| ||||| |||  |   ||| |||||||||||| |||||||||||||||||||| |||||| ||    
T  17524374 tttattaaactcaatatcatgtcgcataatggactaacttattccaatgtgagtaacgttttggatcaatttgaaacttttaaaacataagagatcaact 17524275  T
Q  390 ttaaactt 397  Q
    | ||||||    
T  17524274 tgaaactt 17524267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 375
Target Start/End: Complemental strand, 45170814 - 45170711
Alignment:
Q  272 ttttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaactttta 371  Q
    ||||||| ||||  ||||||||||||||||||||||||||  ||||| | ||||| ||||| |||  |   |||  ||||||| ||||||||||||||||    
T  45170814 ttttttaattttttttgttttattaaactcaatatcatgtcatggaacagactaacttattccaacgtgagtaacattttggaccaacttgaaactttta 45170715  T
Q  372 aaac 375  Q
    ||||    
T  45170714 aaac 45170711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 20870857 - 20870906
Alignment:
Q  106 tttaaaagtttcaagttgatccttatattttaaatgttttaagttggtcc 155  Q
    |||||||||||||||||| ||||||  ||||||| |||||||||||||||    
T  20870857 tttaaaagtttcaagttggtccttacgttttaaaagttttaagttggtcc 20870906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 12714764 - 12714856
Alignment:
Q  62 tggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgttttaagttggt 153  Q
    |||| |||||||||||||| || ||||||||| ||   ||||| ||||| ||||| || |||||| ||||| ||||||| |||||||||||||    
T  12714764 tggtttcttatgtttatttgaatttttaagttggtcatttatggtttaagagttttaaattgatctcttatgttttaaaagttttaagttggt 12714856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 18415024 - 18415088
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||||||||||||||||| || ||||| ||| |||  ||||||||||||| | ||||||||    
T  18415024 caacttgaaacttttaaaacatgaaggatcaacttgaaaactaaaataaacataagggatcaaac 18415088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 20268890 - 20268970
Alignment:
Q  44 atgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatg-ctttaaaagtttcaagttg 123  Q
    ||||||||||| |||||||||| || ||||||||||| |  ||||||||| || | |||||  ||||||||||||||||||    
T  20268890 atgacttaattgcatgtttggtttcgtatgtttattttagattttaagttggtcccttatgtttttaaaagtttcaagttg 20268970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 20269276 - 20269164
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaa 147  Q
    |||||| |||||||| |||| ||||||||||| | |||||||||| ||   ||||| ||||||| ||| |||| | | |||||  ||||||| |||| ||    
T  20269276 ttaattgcatgtttgatctcgtatgtttattttacgttttaagttggtctcttatgttttaaaaatttaaagtcgttcccttacgttttaaaggtttcaa 20269177  T
Q  148 gttggtccaaaac 160  Q
    |||||||||||||    
T  20269176 gttggtccaaaac 20269164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 17524282 - 17524215
Alignment:
Q  353 gatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||||||||||||||||||||||  || || ||| |||  ||||||||||||| | ||||||||    
T  17524282 gatcaacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaac 17524215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 37724808 - 37724733
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttg 123  Q
    ||||||| |||||||| |||||||||||||||| |  |||||||||  | | ||| | ||||||||||||||||||    
T  37724808 cttaattgcatgtttgatctcttatgtttattttagtttttaagttgatcccttaggttttaaaagtttcaagttg 37724733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 40426091 - 40426138
Alignment:
Q  113 gtttcaagttgatccttatattttaaatgttttaagttggtccaaaac 160  Q
    ||||||||||| || |||| ||||||| ||||||||||||||||||||    
T  40426091 gtttcaagttggtctttatgttttaaaagttttaagttggtccaaaac 40426138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 46397364 - 46397419
Alignment:
Q  106 tttaaaagtttcaagttgatcc-ttatattttaaatgttttaagttggtccaaaac 160  Q
    |||||||||||||||||| ||| |||  ||||||| ||||||||||||||||||||    
T  46397364 tttaaaagtttcaagttggtcccttacgttttaaaagttttaagttggtccaaaac 46397419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 20269204 - 20269266
Alignment:
Q  358 acttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||| ||| ||||||||||||| ||| || ||| |||| ||||||||||||| ||||||||||    
T  20269204 actttaaatttttaaaacataagagaccaacttaaaacgtaaaataaacatacgagatcaaac 20269266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 24672027 - 24671977
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaac 406  Q
    ||||||||||||||||||||||||| ||||| ||| |||  ||||||||||    
T  24672027 caacttgaaacttttaaaacataaatgatcaacttaaaatctaaaataaac 24671977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 4592693 - 4592746
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    |||||| ||||||||||||||||| ||| || ||| |||| |||||||||||||    
T  4592693 caacttaaaacttttaaaacataagagaccaacttaaaacctaaaataaacata 4592746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 12292964 - 12292911
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    ||||||||||||||||||||| ||  || || |||||||| |||||||||||||    
T  12292964 caacttgaaacttttaaaacaaaagggaccaactttaaacctaaaataaacata 12292911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 18414797 - 18414744
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    ||||||||||||||||||||||||  || || ||| ||| ||||||||||||||    
T  18414797 caacttgaaacttttaaaacataagggaccaacttaaaaattaaaataaacata 18414744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 36752867 - 36752972
Alignment:
Q  56 catgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaagttggtc 154  Q
    |||||||| || ||||||||||||| || |||||| || || | | ||| |||||||||||||||||| | ||||   |||||||  ||| |||||||||    
T  36752867 catgtttgatcccttatgtttattttaatttttaaattggtccttcatgttttaaaagtttcaagttggtcccttgcgttttaaaaatttcaagttggtc 36752966  T
Q  155 caaaac 160  Q
    ||||||    
T  36752967 caaaac 36752972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 40426142 - 40426105
Alignment:
Q  343 taatgttttggatcaacttgaaacttttaaaacataaa 380  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  40426142 taatgttttggaccaacttaaaacttttaaaacataaa 40426105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 11306591 - 11306655
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||||  || || ||| |||  ||||||||||||| | ||||||||    
T  11306591 caacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaac 11306655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 12292892 - 12292992
Alignment:
Q  51 aattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaagt 149  Q
    |||| |||||||  || ||||||||||||| | |||| ||||| || | || || |||||||||||||||||| | |||||| |||||||  ||||||||    
T  12292892 aattgcatgtttaatcccttatgtttattttaggtttaaagttggtcccttttgttttaaaagtttcaagttggtaccttatgttttaaaaattttaagt 12292991  T
Q  150 t 150  Q
    |    
T  12292992 t 12292992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 17524537 - 17524605
Alignment:
Q  352 ggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||| |||||  | || ||| |||  |||||||||| || ||||||||||    
T  17524537 ggatcaacttgaaacttttaaaaaataaagtaccaacttgaaaactaaaataaacgtaagagatcaaac 17524605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 36752934 - 36752870
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||||||||||||||||| || || ||  || ||| |||||||||||||| | ||||||||    
T  36752934 caacttgaaacttttaaaacatgaaggaccaatttaaaaattaaaataaacataagggatcaaac 36752870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 45505397 - 45505461
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||||  || || ||| |||  ||||||||||||| | ||||||||    
T  45505397 caacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaac 45505461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 48 - 375
Target Start/End: Complemental strand, 63136 - 62811
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  |||||| || || | | ||| |||||||||||||||||| ||| ||| |||||||| |||| |    
T  63136 cttaattgcatgtttgatcccttatgtttattttagtttttaaattggtccttcatgttttaaaagtttcaagttggtcccttacattttaaaagtttca 63037  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
     ||||||||||||| ||  |||| |    ||||||||| | ||||| ||||||||   |||||| |||   ||||| ||||||| |  ||||| || |||    
T  63036 ggttggtccaaaacgttactcactttggaataagttagtctcttccgtcacttaaa--tttaaagatccaggttgacaatatgggtgatggaacttaact 62939  T
Q  247 tatttacaaaatcagtttaaaaacatt-ttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataa 345  Q
    |||||| ||||||||||| |||||||| ||||| |||| ||  ||||||||||||| ||||||||| |||||| | ||||| ||||| |||  |   |||    
T  62938 tatttaaaaaatcagttttaaaacatttttttattttttat--ttttattaaactccatatcatgtcgtggaagagactaacttattccaacgtgagtaa 62841  T
Q  346 tgttttggatcaacttgaaacttttaaaac 375  Q
     |||||||| |||||| |||||||||||||    
T  62840 cgttttggaccaacttaaaacttttaaaac 62811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 62726 - 62839
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||| ||| || ||||| |||||||||| ||| ||||| ||    |||| ||||||||||||||||| |||| |||  ||||||| ||||||    
T  62726 cttaattgcatgcttgatcccttatatttatttcaattttcaagttggtctcgtatgttttaaaagtttcaagttaatcccttacgttttaaaagtttta 62825  T
Q  147 agttggtccaaaac 160  Q
    ||||||||||||||    
T  62826 agttggtccaaaac 62839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 375
Target Start/End: Complemental strand, 33419954 - 33419625
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  ||||||||| || | ||||| ||||||||||||||| || ||| |||  ||||||| ||||||    
T  33419954 cttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgttttaaaagtttcaagatggtcccttacgttttaaaagtttta 33419855  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    |||||| | ||||| ||  |||| |    |||| |||| | ||||  |||||||| || ||||| ||  | |||||  |||||| |  || || || |||    
T  33419854 agttggactaaaacgttactcacgttggaataaattagtctcttcagtcacttaa-cgattaaagattcgggttgaggatatgggtgatgaaacttaact 33419756  T
Q  247 tatttacaaaatcagtttaaaaacatttttt--acttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagata 344  Q
    |||||| |||| || ||| ||||||||||||  | ||||  |||||||||||||||||||||||||| | |||| | ||||| |||||||||  |   ||    
T  33419755 tatttaaaaaaccaattttaaaacatttttttaatttttttttgttttattaaactcaatatcatgtcgcggaagagactaacttatttcaatgtgagta 33419656  T
Q  345 atgttttggatcaacttgaaacttttaaaac 375  Q
    | |||||||| ||||||||||||||||||||    
T  33419655 acgttttggaccaacttgaaacttttaaaac 33419625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 311
Target Start/End: Complemental strand, 37285962 - 37285697
Alignment:
Q  46 gacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgttt 144  Q
    ||||||||| ||||||| ||  | ||||||||||| | |||||||||| || | ||||  ||||||||||||||||||| || ||||||||||||  |||    
T  37285962 gacttaattgcatgtttagttccctatgtttattttaggttttaagttggtcccttatattttaaaagtttcaagttgaccctttatattttaaaaattt 37285863  T
Q  145 taagttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttga 244  Q
     |||||||| |||||| ||  ||||||  | |||||||||   | ||| |||||||| |||| ||| || || ||||| |||||||    |  ||||| |    
T  37285862 caagttggttcaaaacgttactcacattgaaataagttag-tgcctccgtcacttaaccgttaaaagatttg-gttgacaatatgggagataaaatttaa 37285765  T
Q  245 cttatttacaaaatcagtttaaaaaca--ttttttacttttaattgttttattaaactcaatatcatgt 311  Q
    |||||||| ||||||| ||| |||| |  ||||||| ||||  ||||||||||||||||||||||||||    
T  37285764 cttatttagaaaatcatttttaaaatattttttttagtttt-tttgttttattaaactcaatatcatgt 37285697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 311
Target Start/End: Original strand, 48618480 - 48618745
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||||||| ||||||  ||||||||||||| | ||||||| || |||  ||||| ||||||||||| || ||| | |||||| ||||||   ||| |    
T  48618480 cttaattacatatttggttccttatgtttattttaggttttaaattggttatttatgttttaaaagttttaaattggttccttatgttttaacaatttca 48618579  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    ||||||| |||||| ||  ||||||    |||||||| || |||   |||||| || ||||||| || || || || ||||||| |  || |||||   |    
T  48618580 agttggttcaaaacgttactcacattagaataagttaaccccttttgtcacttgattgtttaaagatttgggtcgacaatatgggtgatgaaatttactt 48618679  T
Q  247 tatttacaaaatcagtttaaaaaca-ttttttacttttaattgttttattaaactcaatatcatgt 311  Q
    |||||| ||||||||||| |||||| ||||||| ||||  ||||||||| ||||||||||||||||    
T  48618680 tatttagaaaatcagttttaaaacatttttttatttttttttgttttataaaactcaatatcatgt 48618745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 51388151 - 51388058
Alignment:
Q  68 cttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaagttggtccaaaac 160  Q
    ||||||||||||| |  ||||||||| ||   ||||| ||||||||||| |||||||| ||||| |||||||| ||||||| ||||||||||||    
T  51388151 cttatgtttattttagtttttaagttggtctcttatgttttaaaagttttaagttgatcccttacattttaaaagttttaaattggtccaaaac 51388058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 33241845 - 33241959
Alignment:
Q  47 acttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttt 145  Q
    |||||||| |||| |||||| |||| |||||||| | |||| |||||  | | ||||| ||||||||||| || ||| | |||||||||||||| ||||     
T  33241845 acttaattgcatggttggtcccttaagtttattttaggtttcaagttgttcccttatgttttaaaagttttaatttggttccttatattttaaaagtttc 33241944  T
Q  146 aagttggtccaaaac 160  Q
    || ||||||||||||    
T  33241945 aaattggtccaaaac 33241959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 37285548 - 37285655
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    |||||||||||||||  || ||||||||||||| | ||| ||||||  ||| ||  | ||||||||||||||||| || |||||  ||||||| |||| |    
T  37285548 cttaattacatgtttaatcccttatgtttattttaggttataagttgattccttcagttttaaaagtttcaagttaatcccttacgttttaaaggtttca 37285647  T
Q  147 agttggtc 154  Q
    ||||||||    
T  37285648 agttggtc 37285655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 30548006 - 30548075
Alignment:
Q  322 actaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaacataaaagatcatcttt 391  Q
    ||||| ||||||||| ||   ||| |||||||| |||||||||||||||||||| ||| |||||| ||||    
T  30548006 actaacttatttcaacatgagtaacgttttggaccaacttgaaacttttaaaacgtaagagatcaacttt 30548075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 51388092 - 51388149
Alignment:
Q  352 ggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    |||||||||| ||||||||||||||||| ||| || ||| |||  |||||||||||||    
T  51388092 ggatcaacttaaaacttttaaaacataagagaccaacttaaaaactaaaataaacata 51388149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 19541246 - 19541154
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaa 139  Q
    ||||||| |||||||| | ||||||||||||||   |||||||||||||   ||||| |||| | ||||||||||| | ||||| ||||||||    
T  19541246 cttaattgcatgtttgatatcttatgtttatttttggttttaagttagtcttttatgttttatacgtttcaagttggtcccttacattttaaa 19541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 30547740 - 30547846
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||||| | |||||||||||||||| || ||||| ||| ||   ||||| ||||||||||| |||||| ||| |||  ||||||| ||||||    
T  30547740 cttaattgcatgtt-gatctcttatgtttattttaa-ttttaggttggtcgcttatgttttaaaagttttaagttggtcccttactttttaaaggtttta 30547837  T
Q  147 agttggtcc 155  Q
    |||||||||    
T  30547838 agttggtcc 30547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 37285884 - 37285940
Alignment:
Q  355 tcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacatagg 411  Q
    |||||||||||||||||||| ||||  || || ||| |||| |||||||||||||||    
T  37285884 tcaacttgaaacttttaaaatataagggaccaacttaaaacctaaaataaacatagg 37285940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 375
Target Start/End: Complemental strand, 34439636 - 34439307
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  |||||| || || | | ||| |||||||||||||||||| ||| |||  ||||||| |||| |    
T  34439636 cttaattgcatgtttgatcccttatgtttattttagtttttaaattggtccttcatgttttaaaagtttcaagttggtcccttacgttttaaaagtttaa 34439537  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    |||||||||||||| ||  |||| |     |||||||| | ||||| ||||||||   |||||| |||    |||| ||||||| |  ||||| || |||    
T  34439536 agttggtccaaaacgttactcacgttggattaagttagtctcttccgtcacttaaa--tttaaagatccagtttgacaatatgggtgatggaacttaact 34439439  T
Q  247 tatttacaaaatcagtttaaaaacatttttt---acttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagat 343  Q
    |||||| ||||||| ||| ||||| ||||||   | ||||  |||||||||| ||||||||||||||| |||||| | ||||| ||||| |||  |  ||    
T  34439438 tatttaaaaaatcaattttaaaacttttttttttaattttttttgttttatttaactcaatatcatgtcgtggaagagactaacttattgcaacgtgaat 34439339  T
Q  344 aatgttttggatcaacttgaaacttttaaaac 375  Q
    || |||||||| ||||||||| ||||||||||    
T  34439338 aacgttttggaccaacttgaatcttttaaaac 34439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 9710214 - 9710342
Alignment:
Q  46 gacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttt 144  Q
    ||||||||| |||||||| || ||||||||||||| |  ||||||||| || | ||||| |||||||||||||||||| | ||||| |||||||| ||||    
T  9710214 gacttaattgcatgtttgatcccttatgtttattttagtttttaagttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaagttt 9710313  T
Q  145 taagttggtccaaaactttgatcacatct 173  Q
     ||||||||||||||| ||  ||||||||    
T  9710314 caagttggtccaaaacgttactcacatct 9710342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 34687755 - 34687867
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaa 147  Q
    |||||| ||||||||  | ||||||||||||| | |||||||||| |||| ||||| ||||||| |||||||||| | |||||| ||||||| |||| ||    
T  34687755 ttaattgcatgtttgaccccttatgtttattttaggttttaagttggttctttatgttttaaaaatttcaagttggtcccttatgttttaaaagtttcaa 34687854  T
Q  148 gttggtccaaaac 160  Q
    |||||||||||||    
T  34687855 gttggtccaaaac 34687867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 7645198 - 7645083
Alignment:
Q  46 gacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttt 144  Q
    ||||||||  |||||||| || ||||||||||||| |  |||||||||||| | ||||  |||||||||||||||||||| ||||| |||||||| ||||    
T  7645198 gacttaatcgcatgtttgatcccttatgtttattttagtttttaagttagtcctttatattttaaaagtttcaagttgatcccttacattttaaaagttt 7645099  T
Q  145 taagttggtccaaaac 160  Q
     |||||| ||||||||    
T  7645098 caagttgatccaaaac 7645083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 18548761 - 18548623
Alignment:
Q  235 tggaatttgacttatttacaaaatcagtttaaaaacattttt-tacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattattt 333  Q
    |||||||| ||||||||| ||||||||||| ||||||||||| || |||   |||||||||||||||||||||||||| | | ||   ||||| ||||||    
T  18548761 tggaatttaacttatttagaaaatcagttttaaaacatttttgtaattt---ttgttttattaaactcaatatcatgtcgcgaaagggactaacttattt 18548665  T
Q  334 caagatagataatgttttggatcaacttgaaacttttaaaac 375  Q
    |||  |   |||||||||||| |||||| |||| ||||||||    
T  18548664 caacttgagtaatgttttggaccaacttaaaacctttaaaac 18548623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 311
Target Start/End: Complemental strand, 16049889 - 16049629
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatccttatattttaaatgttttaag 148  Q
    |||||| |||||||| || ||||||||||||| |  ||| ||||| || | ||||| ||||||||||| |||||||| ||||  ||||||| |||| |||    
T  16049889 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagttttaagttgat-cttacgttttaaaagtttcaag 16049791  T
Q  149 ttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgactta 248  Q
    |||||||||||  ||  |||| |    |||| |||| |  ||   ||||||||| |||| || ||  | ||||| |||||||||  ||||| || |||||    
T  16049790 ttggtccaaaatgttactcacgttggaataaattagtctatttagtcacttaat-gttttaagattcgggttgacaatatggatgatggaacttaactta 16049692  T
Q  249 tttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgt 311  Q
    |||| |||| |||||| |||| |||||||   |||  ||||||||||||||||||||||||||    
T  16049691 tttagaaaaccagttttaaaatatttttttaatttttttgttttattaaactcaatatcatgt 16049629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 7644780 - 7644892
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  ||||||||| || | ||||| |||||||||||||||||||| |||||  |||||||  |||||    
T  7644780 cttaattgcatgtttgatc-cttatgtttattttagtttttaagttggtcccttatgttttaaaagtttcaagttgatcccttacgttttaaaaatttta 7644878  T
Q  147 agttggtccaaaac 160  Q
    ||||||||| ||||    
T  7644879 agttggtccgaaac 7644892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 18548539 - 18548651
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagtt-gatccttatattttaaatgttttaa 147  Q
    |||||| |||||||| |  ||||||||||||| | |||||||||| || | ||||| ||||||||||| ||||| | | ||||  ||||||| |||||||    
T  18548539 ttaattgcatgtttgattccttatgtttattttaggttttaagttggtactttatgttttaaaagttttaagttggtttcttacgttttaaaggttttaa 18548638  T
Q  148 gttggtccaaaac 160  Q
    |||||||||||||    
T  18548639 gttggtccaaaac 18548651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 18935053 - 18935165
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||| || | || || ||||||| ||| |||||| | |||||| || |||| |||| |    
T  18935053 cttaattgcatgtttggtctcttatgtttattttaagttttaagttggtcccttttgttttaaaacttttaagttggtcccttatgttataaaagtttca 18935152  T
Q  147 agttggtccaaaa 159  Q
    | ||||| |||||    
T  18935153 aattggttcaaaa 18935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 420
Target Start/End: Complemental strand, 18429586 - 18429453
Alignment:
Q  287 tgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaacataaaagatca 386  Q
    |||||||||||||||||||| |||| ||||||   ||||| |||||  ||  |   |||| ||||||| ||||||||||||||||||| ||||  || ||    
T  18429586 tgttttattaaactcaatattatgtcgtggaagggactaacttattctaacgtgagtaatattttggaccaacttgaaacttttaaaatataagggacca 18429487  T
Q  387 tctttaaacttaaaataaacataggagatcaaac 420  Q
     ||| |||  ||||||||||||| ||||||||||    
T  18429486 acttgaaaactaaaataaacataagagatcaaac 18429453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 18935453 - 18935348
Alignment:
Q  56 catgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgttttaagttggtc 154  Q
    ||||||||||| ||||||||||||| | |||| | ||| || | ||||| |||||||||||||||||| || ||| | ||||||| |||| |||||||||    
T  18935453 catgtttggtcccttatgtttattttaggtttcatgttggtcccttatgttttaaaagtttcaagttggtctcttgtgttttaaaagtttcaagttggtc 18935354  T
Q  155 caaaac 160  Q
    | ||||    
T  18935353 ccaaac 18935348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 34439222 - 34439335
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    |||||||  ||||||| |||||||||||||||| |  ||||||||| |||| ||| | |||||||| ||||||||| | |||||  ||||||| | || |    
T  34439222 cttaattgtatgtttgatctcttatgtttattttagtttttaagttggttcgttaggttttaaaagattcaagttggtcccttacgttttaaaagattca 34439321  T
Q  147 agttggtccaaaac 160  Q
    ||||||||||||||    
T  34439322 agttggtccaaaac 34439335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 32665959 - 32665844
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagtt-gatccttatattttaaatgtttta 146  Q
    ||||||| |||||  |||||||||||||||||||| |||||||||| |  | |||   ||||||||||| || || || |||||| ||||||  ||||||    
T  32665959 cttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggaccttta-catttaaaagttttaaattggacccttatgttttaagagtttta 32665861  T
Q  147 agttggtccaaaacttt 163  Q
    |||||||||||||||||    
T  32665860 agttggtccaaaacttt 32665844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 4623067 - 4623181
Alignment:
Q  46 gacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgttt 144  Q
    ||||||||| |||||||| || ||||||||||||| |  |||||| ||  | | ||||| ||||||||||| |||||| || ||||  ||||||| ||||    
T  4623067 gacttaattgcatgtttgatcccttatgtttattttagtttttaaattgatcccttatgttttaaaagttttaagttggtctcttacgttttaaaggttt 4623166  T
Q  145 taagttggtccaaaa 159  Q
     ||||||||||||||    
T  4623167 caagttggtccaaaa 4623181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 4623441 - 4623502
Alignment:
Q  359 cttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||||||||||||||||| ||||| ||| |||  ||||||||||||| | ||||||||    
T  4623441 cttgaaacttttaaaacataaaggatcaacttgaaaactaaaataaacataagggatcaaac 4623502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 7535300 - 7535345
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagtt 93  Q
    ||||||| ||||||||||||||||||||||||| | ||||||||||    
T  7535300 cttaattgcatgtttggtctcttatgtttattttacgttttaagtt 7535345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 18429442 - 18429517
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttg 123  Q
    ||||||| |||||||| |||||||||||||||| |  ||| ||||| || | ||||  ||||||||||||||||||    
T  18429442 cttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatattttaaaagtttcaagttg 18429517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 35731757 - 35731689
Alignment:
Q  244 acttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggt 314  Q
    ||||||||||| ||||||||| |||| ||| || | ||||  ||||||||||||||||||||| |||||||    
T  35731757 acttatttacataatcagttttaaaatattattaattttt--ttgttttattaaactcaatattatgtggt 35731689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 23871002 - 23871076
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttg 123  Q
    |||||| | |||||||||||||||||||||||  ||||| ||||| || | |||||  |||||| ||||||||||    
T  23871002 ttaattgcttgtttggtctcttatgtttattttgagtttcaagtttgtcccttatgtattaaaattttcaagttg 23871076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 4623432 - 4623371
Alignment:
Q  100 ttatgctttaaaagtttcaagttgatc-cttatattttaaatgttttaagttggtccaaaac 160  Q
    ||||| |||||||||||||||||| || ||||| ||||||| |||| ||||||||| |||||    
T  4623432 ttatgttttaaaagtttcaagttggtcacttatgttttaaaagtttcaagttggtcaaaaac 4623371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 7535614 - 7535553
Alignment:
Q  100 ttatgctttaaaagtttcaagttgatcc-ttatattttaaatgttttaagttggtccaaaac 160  Q
    ||||| |||||||| ||||||||| ||| ||| |||||| | ||||||||||||||||||||    
T  7535614 ttatgttttaaaagattcaagttggtcccttacattttacaggttttaagttggtccaaaac 7535553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 7644858 - 7644801
Alignment:
Q  352 ggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    ||||||||||||||||||||||||||||  || || ||| |||  |||||||||||||    
T  7644858 ggatcaacttgaaacttttaaaacataagggaccaacttaaaaactaaaataaacata 7644801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 9081231 - 9081288
Alignment:
Q  106 tttaaaagtttcaagttgatccttatattttaaatgttttaagttggtccaaaacttt 163  Q
    ||||||||||| || |||| |||||| ||||||  ||||||||||||| |||||||||    
T  9081231 tttaaaagttttaaattgacccttatgttttaagagttttaagttggttcaaaacttt 9081288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 25879908 - 25879855
Alignment:
Q  107 ttaaaagtttcaagttgatcc-ttatattttaaatgttttaagttggtccaaaa 159  Q
    ||||||||||||||||| ||| |||||||||||| |||| |||||||| |||||    
T  25879908 ttaaaagtttcaagttggtcccttatattttaaaagtttcaagttggttcaaaa 25879855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 7645117 - 7645185
Alignment:
Q  352 ggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||| ||||| ||  | ||| |||  ||||||||||||| | ||||||||    
T  7645117 ggatcaacttgaaacttttaaaatataaaggactaacttaaaaactaaaataaacataagggatcaaac 7645185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 9710291 - 9710227
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||||  || || ||| |||  ||||||||||||| | ||||||||    
T  9710291 caacttgaaacttttaaaacataagggaccaacttaaaaactaaaataaacataagggatcaaac 9710227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 23871293 - 23871373
Alignment:
Q  238 aatttgacttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaa 318  Q
    ||||| ||||||||| |||| | | || ||||| |||||||  |||  ||||||||||||| |||||||||||| ||||||    
T  23871293 aatttaacttatttagaaaaccggatttaaaactttttttaaatttttttgttttattaaattcaatatcatgtcgtggaa 23871373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 34687867 - 34687835
Alignment:
Q  347 gttttggatcaacttgaaacttttaaaacataa 379  Q
    |||||||| ||||||||||||||||||||||||    
T  34687867 gttttggaccaacttgaaacttttaaaacataa 34687835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 375
Target Start/End: Complemental strand, 10567873 - 10567548
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| ||| |||| || ||||||||||||| || ||| || || | || | ||| ||||| |||||||||||| ||| |||  ||||||| |||| |    
T  10567873 cttaattgcatatttgatcccttatgtttattttaattttcaaatt-gatcttcatgttttaagagtttcaagttggtcccttacgttttaaaagtttca 10567775  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgact 246  Q
    |||||||||||||| ||  |||| |    ||||||||| | ||||| ||||||||   |||||| ||||  ||||| ||||| | |  ||||| || |||    
T  10567774 agttggtccaaaacattactcacgttggaataagttagtctcttccgtcacttaaa--tttaaagatctaggttgataatataggtgatggaacttaact 10567677  T
Q  247 tatttacaaaatcagtttaaaaaca-ttttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataa 345  Q
    |||||| ||||||| ||| |||| | ||||||| ||||  |||||||||||||||||||||||||| || ||| | ||||| |||||||||  |   |||    
T  10567676 tatttaaaaaatcaattttaaaataattttttaattttt-ttgttttattaaactcaatatcatgtcgtagaagagactaacttatttcaatgtgagtaa 10567578  T
Q  346 tgttttggatcaacttgaaacttttaaaac 375  Q
     |||||| | ||||||||||||||||||||    
T  10567577 cgttttgaaccaacttgaaacttttaaaac 10567548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 420
Target Start/End: Complemental strand, 28613385 - 28613206
Alignment:
Q  244 acttatttacaaaatcagtttaaaaacatttttt---acttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagata 340  Q
    ||||||||| |||||||| || ||||||||||||   | ||||  |||||||||||||||||||||||||| |||||| | ||||| ||||| ||| ||     
T  28613385 acttatttaaaaaatcagctttaaaacattttttttaatttttgtttgttttattaaactcaatatcatgtcgtggaagagactaacttattccaatatg 28613286  T
Q  341 gataatgttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
      ||| |||||||| ||||||  |||||||||||| |||  || || ||| |||  ||||||||| ||| | ||||||||    
T  28613285 agtaacgttttggaccaacttacaacttttaaaacgtaagggaccaacttaaaaactaaaataaatataagggatcaaac 28613206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 32629064 - 32629176
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaa 147  Q
    ||||||||||||||| || ||||||||||||| | ||||||||||||  | ||||| ||||||| ||| |||||| | ||||| |||||||| |||| ||    
T  32629064 ttaattacatgtttgatcccttatgtttattttaggttttaagttagacctttatgttttaaaaattttaagttggtcccttacattttaaaggtttcaa 32629163  T
Q  148 gttggtccaaaac 160  Q
    ||| |||||||||    
T  32629164 gttagtccaaaac 32629176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 6612050 - 6611937
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||||||| | |||||||||||||| |  |||||||||  | | || || |||||||||||||||||| ||| |||  |||||||||||| |    
T  6612050 cttaattgcatgtttgatgtcttatgtttattttagattttaagttgatcccttgtgttttaaaagtttcaagttggtcccttacgttttaaatgtttca 6611951  T
Q  147 agttggtccaaaac 160  Q
    ||||||||||||||    
T  6611950 agttggtccaaaac 6611937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 34829968 - 34829855
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||||| |||||||||||||||| | |||||||||| ||   ||||| ||||||||||||| |||| | |||||  ||||||| |||| |    
T  34829968 cttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttcatgttggtcccttacgttttaaaggtttca 34829869  T
Q  147 agttggtccaaaac 160  Q
    ||||||| ||||||    
T  34829868 agttggttcaaaac 34829855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 375
Target Start/End: Complemental strand, 29675090 - 29674962
Alignment:
Q  239 atttgacttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcatgtggtggaataaactaaattatttcaaga 338  Q
    |||| ||||||||| ||||||||||| ||||||||||||        ||| |||||||| ||||||||||||| ||||||   ||||| ||||| |||      
T  29675090 atttaacttatttagaaaatcagttttaaaacatttttt--------ttgatttattaacctcaatatcatgttgtggaagggactaatttattccaacg 29674999  T
Q  339 tagataatgttttggatcaacttgaaacttttaaaac 375  Q
    |   | |||||||||||||||||||||||||||||||    
T  29674998 tgagtcatgttttggatcaacttgaaacttttaaaac 29674962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 375
Target Start/End: Original strand, 34829794 - 34829883
Alignment:
Q  286 ttgttttattaaactcaatatcatgtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaac 375  Q
    |||||||||||||||||||||||| | ||||||   ||||| ||||||||| || | ||| |||||| | ||||||||||| ||||||||    
T  34829794 ttgttttattaaactcaatatcatctcgtggaaaggactaacttatttcaatatgggtaacgttttgaaccaacttgaaacctttaaaac 34829883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 34829893 - 34829957
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||| ||||||||||||||||||| ||| || ||| |||| ||||||||||||| ||||||||||    
T  34829893 caacatgaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaac 34829957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 6273982 - 6273889
Alignment:
Q  66 ctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcct-tatattttaaatgttttaagttggtccaaa 158  Q
    ||||||||||||||  | ||||| ||||||||  ||||| |||||||||||||||||| || | ||| ||||||| || | |||||||||||||    
T  6273982 ctcttatgtttattctaggttttcagttagtttcttatgttttaaaagtttcaagttggtcatgtatgttttaaaagtatcaagttggtccaaa 6273889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 34829602 - 34829655
Alignment:
Q  69 ttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagtt 122  Q
    |||||||||||| |||||||||||| |||  ||||| |||||||||||||||||    
T  34829602 ttatgtttattttaagttttaagttggttacttatgttttaaaagtttcaagtt 34829655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 22793321 - 22793401
Alignment:
Q  68 cttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgttttaa 147  Q
    ||||||||||||| | |||| ||||| || | ||||| |||||||||||||||||| | |||||| ||||||| |||||||    
T  22793321 cttatgtttattttaggtttcaagttggtcccttatgttttaaaagtttcaagttggtcccttatgttttaaaagttttaa 22793401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 28705906 - 28705848
Alignment:
Q  64 gtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagtt 122  Q
    ||||||||||||||||| |||||||||||| || | || || ||||||| |||||||||    
T  28705906 gtctcttatgtttattttaagttttaagttggtcccttttgttttaaaactttcaagtt 28705848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 22793376 - 22793323
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    ||||||||||||||||||||||||  || || ||| |||| |||||||||||||    
T  22793376 caacttgaaacttttaaaacataagggaccaacttgaaacctaaaataaacata 22793323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 22793679 - 22793606
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagtt 122  Q
    |||||| |||||||| || ||||||||||||| | |||| ||||| || | ||| | |||||||||||||||||    
T  22793679 ttaattgcatgtttgatcccttatgtttattttaggtttcaagttggtcccttacgttttaaaagtttcaagtt 22793606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 6273612 - 6273692
Alignment:
Q  43 tatgacttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttg 123  Q
    ||||||| |||| |||||||  ||| |||||||||||| | |||| ||||| |||| ||||| |||||| |||| ||||||    
T  6273612 tatgactaaattgcatgtttaatctattatgtttattttacgtttcaagttggttctttatgttttaaacgttttaagttg 6273692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 6273786 - 6273845
Alignment:
Q  246 ttatttacaaaatcagtttaaaaacatttttta--cttttaattgttttattaaactcaa 303  Q
    ||||||| ||||||||||| |||| ||||||||   |||| |||||||||||||||||||    
T  6273786 ttatttataaaatcagttttaaaatattttttattttttttattgttttattaaactcaa 6273845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 6611975 - 6612039
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||| ||  ||||| ||| |||  ||||||||||||| || |||||||    
T  6611975 caacttgaaacttttaaaacacaagggatcaacttaaaatctaaaataaacataagacatcaaac 6612039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 10567757 - 10567789
Alignment:
Q  343 taatgttttggatcaacttgaaacttttaaaac 375  Q
    |||||||||||| ||||||||||||||||||||    
T  10567757 taatgttttggaccaacttgaaacttttaaaac 10567789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 11122040 - 11122128
Alignment:
Q  189 ttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaatttgacttatttacaaaatcagtttaaaaacatttttt 277  Q
    ||||||||||| | ||||||||| || | ||||| |||||| ||  |  ||||| ||||||||| ||||||| ||| ||||||||||||    
T  11122040 ttccatcacttgaccgtttaaatgtccgggttgacaatatgaatagtaaaatttaacttatttaaaaaatcaattttaaaacatttttt 11122128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 420
Target Start/End: Original strand, 22793597 - 22793669
Alignment:
Q  348 ttttggatcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||||  ||||||||||||||||||| |||  || || ||| |||| ||||||||||||| | ||||||||    
T  22793597 ttttggacaaacttgaaacttttaaaacgtaagggaccaacttgaaacctaaaataaacataagggatcaaac 22793669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 34829655 - 34829603
Alignment:
Q  357 aacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacata 409  Q
    |||||||||||||||||||||||   | || ||| ||||||||||||||||||    
T  34829655 aacttgaaacttttaaaacataagtaaccaacttaaaacttaaaataaacata 34829603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 311
Target Start/End: Complemental strand, 3444 - 3180
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  ||| ||||| || | ||||| |||||||||||||||||| | |||||  ||||||| |||| |    
T  3444 cttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttca 3345  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaa-tttgac 245  Q
    |||||||||||||| ||  |||| |    ||||||||| | ||||  ||||||||| ||||| | || || ||||| ||||||| |  | |||  || ||    
T  3344 agttggtccaaaacgttactcactttggaataagttagtcccttctgtcacttaat-gtttatagatttgggttgacaatatgggtgatagaaccttaac 3246  T
Q  246 ttatttacaaaatcagtttaaaaacat-tttttacttttaattgttttattaaactcaatatcatgt 311  Q
    ||||||| ||||||||||| ||||||| |||||| | ||  | ||||||||||||||||||||||||    
T  3245 ttatttagaaaatcagttt-aaaacatatttttaatgtttttggttttattaaactcaatatcatgt 3180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 3369 - 3433
Alignment:
Q  356 caacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||||||  || || ||| |||  ||||||||||||| | ||||||||    
T  3369 caacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaac 3433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 9985 - 9873
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttga-tccttatattttaaatgtttta 146  Q
    ||||||| |||||||| |||||||||||||||| | |||||||||| ||   ||||| ||||||||||||||| ||| | ||||  ||||||| ||||||    
T  9985 cttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttcaagatgattgcttacgttttaaaagtttta 9886  T
Q  147 agttggtccaaaa 159  Q
    | ||||| |||||    
T  9885 atttggtacaaaa 9873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 9908 - 9974
Alignment:
Q  354 atcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||| ||||||||||||||||||||| ||| || ||| |||| ||||||||||||| ||||||||||    
T  9908 atcatcttgaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaac 9974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 9650 - 9590
Alignment:
Q  360 ttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||  || |||||| ||| |||||||||||||| ||||||||||    
T  9650 ttgaaacttttaaaacataagggaccatcttaaaaattaaaataaacataagagatcaaac 9590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 9579 - 9650
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaa 119  Q
    ||||||| |||||||| |||||||||||||||| || ||||||| | || | ||||| ||||||||||||||    
T  9579 cttaattccatgtttgatctcttatgtttattttaatttttaagatggtcccttatgttttaaaagtttcaa 9650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 10628 - 10516
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttga-tccttatattttaaatgtttta 146  Q
    ||||||| |||||||| |||||||||||||||| | |||||||||| ||   ||||| ||||||||||||||| ||| | ||||  ||||||| ||||||    
T  10628 cttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttcaagatgattgcttacgttttaaaagtttta 10529  T
Q  147 agttggtccaaaa 159  Q
    | ||||| |||||    
T  10528 atttggtacaaaa 10516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 10551 - 10617
Alignment:
Q  354 atcaacttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||| ||||||||||||||||||||| ||| || ||| |||| ||||||||||||| ||||||||||    
T  10551 atcatcttgaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaac 10617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 10293 - 10233
Alignment:
Q  360 ttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    ||||||||||||||||||||  || |||||| ||| |||||||||||||| ||||||||||    
T  10293 ttgaaacttttaaaacataagggaccatcttaaaaattaaaataaacataagagatcaaac 10233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 10222 - 10293
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaa 119  Q
    ||||||| |||||||| |||||||||||||||| || ||||||| | || | ||||| ||||||||||||||    
T  10222 cttaattccatgtttgatctcttatgtttattttaatttttaagatggtcccttatgttttaaaagtttcaa 10293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 309
Target Start/End: Original strand, 33992335 - 33992597
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  ||| ||||| || | ||||| |||| |||||| || ||| ||| |||  ||||||| |||| |    
T  33992335 cttaattgcatgtttgatcccttatgtttattttagttttcaagttcgtcccttatgttttataagttttaaattggtcccttacgttttaaaagtttca 33992434  T
Q  147 agttggtccaaaactttgatcacatctatataagttagccacttccatcacttaatcgtttaaatatctgagttgaaaatatggattctggaat-ttgac 245  Q
    ||||||| |||||| ||  |||| |  | ||||||||| |  ||||| ||||||| |||||||| || ||  |||| ||||||  |  | |||| || ||    
T  33992435 agttggttcaaaacgttattcacgttgaaataagttagtctattccaccacttaa-cgtttaaagatttggattgacaatatgagtgatagaatcttaac 33992533  T
Q  246 ttatttacaaaatcagtttaaaaacattttttacttttaattgttttattaaactcaatatcat 309  Q
    ||||||| |||||||||||||||   ||||||| ||||  | ||||||||||||||||||||||    
T  33992534 ttatttagaaaatcagtttaaaacatttttttaatttttttggttttattaaactcaatatcat 33992597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 19935434 - 19935546
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgat-ccttatattttaaatgtttta 146  Q
    ||||||| |||||| ||||||||||||||||||   |||||||||| || ||||||| |||| || |||||||||| | ||| || ||||||| | || |    
T  19935434 cttaattgcatgttgggtctcttatgtttatttttggttttaagttggtccattatgttttataaatttcaagttggtccctgatgttttaaaag-ttca 19935532  T
Q  147 agttggtccaaaac 160  Q
    ||||||||||||||    
T  19935533 agttggtccaaaac 19935546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 25508216 - 25508104
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatcc-ttatattttaaatgttttaa 147  Q
    |||||| ||||||||||| |||| ||| |||| | ||||||||||  | | ||||| |||||||||||||||||  ||| |||||||||    |||||||    
T  25508216 ttaattgcatgtttggtcccttaagttgattttaggttttaagttgctcccttatgttttaaaagtttcaagttcgtcctttatatttttttagttttaa 25508117  T
Q  148 gttggtccaaaac 160  Q
    |||||||||||||    
T  25508116 gttggtccaaaac 25508104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 33992485 - 33992420
Alignment:
Q  310 gtggtggaataaactaaattatttcaagatagataatgttttggatcaacttgaaacttttaaaac 375  Q
    ||||||||||| ||||| |||||||||  |  |||| |||||| | ||||||||||||||||||||    
T  33992485 gtggtggaatagactaacttatttcaacgtgaataacgttttgaaccaacttgaaacttttaaaac 33992420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 33992748 - 33992635
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagtt-gatccttatattttaaatgtttta 146  Q
    ||||||| |||||||| || ||||||||||||| |  |||||| || || | ||||| ||||||||||| || || | ||||||  ||||||| ||||||    
T  33992748 cttaattgcatgtttgatcccttatgtttattttagtttttaaattggtcctttatgttttaaaagttttaaattggttccttacgttttaaaagtttta 33992649  T
Q  147 agttggtccaaaac 160  Q
    | ||||| ||||||    
T  33992648 aattggttcaaaac 33992635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 16642751 - 16642863
Alignment:
Q  49 ttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaagttgatc-cttatattttaaatgttttaa 147  Q
    |||||| || ||||| || ||||||||||||| | |||||||||| || | ||||| ||||||  |||||||||| || |||   ||||||| |||| ||    
T  16642751 ttaattgcaagtttgatcccttatgtttattttaggttttaagttggtcccttatgttttaaatatttcaagttggtctcttgcgttttaaaggtttcaa 16642850  T
Q  148 gttggtccaaaac 160  Q
    ||||||| |||||    
T  16642851 gttggtctaaaac 16642863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 41563800 - 41563832
Alignment:
Q  129 tatattttaaatgttttaagttggtccaaaact 161  Q
    ||||||||||| |||||||||||||||||||||    
T  41563800 tatattttaaaagttttaagttggtccaaaact 41563832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 47488 - 47417
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttatttcaagttttaagttagttcattatgctttaaaagtttcaa 119  Q
    ||||||| ||||||||||| ||||||||||||| | |||||||||| ||   ||||| ||||||||||||||    
T  47488 cttaattgcatgtttggtcccttatgtttattttaggttttaagttggtcgcttatgttttaaaagtttcaa 47417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 29610 - 29642
Alignment:
Q  48 cttaattacatgtttggtctcttatgtttattt 80  Q
    |||||||||||||||| ||||||||||||||||    
T  29610 cttaattacatgtttgatctcttatgtttattt 29642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 29681 - 29621
Alignment:
Q  360 ttgaaacttttaaaacataaaagatcatctttaaacttaaaataaacataggagatcaaac 420  Q
    |||||| ||||||||| ||| |||||| ||| |||  ||||||||||||| ||||||||||    
T  29681 ttgaaatttttaaaacgtaagagatcaacttgaaaactaaaataaacataagagatcaaac 29621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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