View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_low_11 (Length: 394)
Name: NF19434_low_11
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 934716 - 934349
Alignment:
| Q |
19 |
acaagtgcaagctgcaatacaacatatacacacatcatatttagcatttatttatgaaataataaaaaggaactaaaatattaggcacatgctagaatag |
118 |
Q |
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| T |
934716 |
acaagtgcaagctgcaatacaacatatacacacatcatatttagcatttatttatgaaataataaaaatgaactaaaatattaggcacatgctagaatag |
934617 |
T |
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| Q |
119 |
tttggatattgttg---cttacattgagtatgataaagatggataaatgacgaaattccataatggaaattgatgaactagagctccaactaaatgatag |
215 |
Q |
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| T |
934616 |
tttggatattgttgttgcttacattgagtacgataaagatggataaatgacgaaattccatagtggaaattgatgaactagagctccaactaaatggtag |
934517 |
T |
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| Q |
216 |
taattgaaaataaggattgatgaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttataggaagggaatagttt-tagatatt |
314 |
Q |
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| T |
934516 |
taattgaagataaagattgaggaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttataggaagggaatagtttctagatatt |
934417 |
T |
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| Q |
315 |
tgtcggttgtatgcttgaatttcaactggctaccaaatttgacacacttttaataacttcaactgcct |
382 |
Q |
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| T |
934416 |
tgtcggttgtatgcttgaatttcaactggctaccaaatttgacacacttttaataacttcaactgcct |
934349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 900830 - 900775
Alignment:
| Q |
237 |
gaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttatag |
292 |
Q |
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| T |
900830 |
gaactgaaaacaagatagaatgaagatccctaagtggccttacacatcatttatag |
900775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 908665 - 908606
Alignment:
| Q |
232 |
ttgatgaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttata |
291 |
Q |
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|||| |||||| ||||||||||||||||||| || ||| ||| || |||||||||||||| |
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| T |
908665 |
ttgaggaactgtaagcaagatagaatgaagacccgtaactggactcacacaccatttata |
908606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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