View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_low_13 (Length: 390)
Name: NF19434_low_13
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 28816490 - 28816113
Alignment:
| Q |
18 |
tctttttctgccataagcgatcaattccactgtcagcatctccctgaaaataaaaatgatataaaggtgtatcaa-----tagaaatgcaattcataaaa |
112 |
Q |
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| T |
28816490 |
tctttttctgccataagcgatcaattccactgtcagcatctccctgaaaataaaaatgatataacatgaaatcatgaccttagaaatgcaattcataaaa |
28816391 |
T |
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| Q |
113 |
cctaaatcatcaaggagtatcaatagaacaacatagtatgttcaatggccgacaaaaatcagaatacaatatggtattgagagcatgtccaacatgaata |
212 |
Q |
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| T |
28816390 |
cctaaatcatcaaggtgtatgaatagaacaacatagtatgttcaatggctgacagaaatcagaatacaatatggtattgagagcatgtccaacatgaata |
28816291 |
T |
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| Q |
213 |
taaaggttaaatattgttgttcaacccagcattaataaacatgtcatgattcagtcacacaacataaactaaaagcacatatata--------------- |
297 |
Q |
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| T |
28816290 |
taaagattaaatattgttgttcaacccagcattaataaacatgtcatgattcagtcacacaacataaactaaaagcacatatatatatatatatatttca |
28816191 |
T |
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| Q |
298 |
-----tttctaaagaataaaaaccattgtaacatatcaattttcagttaagnnnnnnncttacaaaagcagacagtgt |
370 |
Q |
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| T |
28816190 |
atatgtttctaaagaataaaaaccattgtaacatatcaattttcagttaagtttttttcttacaaaagtagacagtgt |
28816113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 9396816 - 9396659
Alignment:
| Q |
96 |
aaatgcaattcataaaacctaaatcatcaaggagtatcaatagaacaacatagtatgttcaatggccgacaaaaatcagaatacaatatggtattgagag |
195 |
Q |
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| T |
9396816 |
aaatgcaataaatgaaacctaaatcatcaaggtgtatcaatagaacatcaaagtatattcaatgggtgacataacttataatacaacatgatacatagag |
9396717 |
T |
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| Q |
196 |
catgtccaacatgaatataaaggttaaatattgttgttcaacccagcattaataaacat |
254 |
Q |
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| T |
9396716 |
taattccgacgtgaatataaagtttaaatatt-tttttcaacccagcattaataaacat |
9396659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 14366327 - 14366273
Alignment:
| Q |
18 |
tctttttctgccataagcgatcaattccactgtcagcatctccctgaaaataaaa |
72 |
Q |
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| T |
14366327 |
tcttcttctgccacaggcgatcaattccactgtcagcatctccctgaaaataaaa |
14366273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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